Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi17g1103 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1104 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1105 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1106 Acco01g0528 . Accr1g00341 . . . Aed7g0371 . . . . . . . Alju02g3371 . . . . . . . . . Bisa01g0489 . . . . . Cca08g00396 . Dere06g1646 . . . Enph12g1068 . Glsi01g1853 . . . . Gma09g01561 . . . . Lal8g0503 . . . . . Lan10g0486 . . . . . Lapu4g00343 . Lasa1g02193 . Lele45g0360 Lele46g0387 Lele47g1035 Lele48g1101 . . . . Lja2g2316 . . Mal6g3525 Mepo7g00739 . Mesa22g02897 . Mibi01g3143 . . Mtr6g1993 . . . . Prci14g1892 . . . . . . . . . . . Pvu4g1495 . Rops5g00503 . Seca10g04560 . . . . . . Sto10g2734 . Tpr2g5168 Trre11g01808 . . Tsu06g03534 Vian8g01312 . Vifa1g03652 . . . Viun4g00557 . Vivi2g05855 . Vra1g0769 .
Vvi17g1107 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1108 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1109 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1110 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1111 . . . . . . Aed7g0366 . . . . . . . . . . . Apr6g0922 . . . . . . . Bva04g00964 . . . Cca08g00386 . . . . . . . . . . . . Gma09g01566 . . . . . Lal10g0920 Lal25g0511 . . . . . . . . . Lapu4g00338 . Lasa1g02187 . . . . . . . . . Lja2g2311 . . Mal6g3518 Mepo7g00756 . Mesa22g02869 . . . . Mtr6g1983 . . . . . . . . Pste9g01365 . . . . . . . Pvu4g1501 . Rops5g00495 . Seca10g04567 . Spst4g02930 . . . . . . Tpr2g5173 Trre11g01813 . . Tsu06g03550 Vian8g01317 . Vifa1g03642 . Vimu8g01743 . Viun4g00550 . Vivi2g05864 . Vra1g0764 .
Vvi17g1112 . . . . . . . . . . . . . . . . . . . Apr2g1620 . . . . . . Bva04g00962 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi17g1103 Chr17 15412931 15414450 -
Vvi Vvi17g1104 Chr17 15480791 15484188 +
Vvi Vvi17g1105 Chr17 15490058 15490921 -
Vvi Vvi17g1106 Chr17 15501812 15503387 -
Acco Acco01g0528 Chr01 6318692 6319853 -
Accr Accr1g00341 Chr1 6864360 6865647 -
Aed Aed7g0371 Chr7 2759687 2764205 -
Alju Alju02g3371 Chr02 51588026 51589262 +
Bisa Bisa01g0489 Chr01 7072086 7073281 +
Cca Cca08g00396 Chr08 6065578 6067098 -
Dere Dere06g1646 Chr06 30944520 30945692 -
Enph Enph12g1068 Chr12 17616651 17617811 -
Glsi Glsi01g1853 Chr01 82095652 82096856 -
Gma Gma09g01561 Chr09 40712015 40713153 +
Lal Lal8g0503 Chr8 3445936 3447215 -
Lan Lan10g0486 Chr10 3765258 3766430 -
Lapu Lapu4g00343 Chr4 3570726 3572211 -
Lasa Lasa1g02193 Chr1 242730879 242731949 -
Lele Lele45g0360 Chr45 2840380 2841439 -
Lele Lele46g0387 Chr46 2584211 2585283 -
Lele Lele47g1035 Chr47 16188360 16189435 +
Lele Lele48g1101 Chr48 15764486 15765608 +
Lja Lja2g2316 Chr2 27746318 27747407 -
Mal Mal6g3525 Chr6 104084427 104085980 -
Mepo Mepo7g00739 Chr7 11736072 11737717 +
Mesa Mesa22g02897 Chr22 76896537 76898161 -
Mibi Mibi01g3143 Chr01 55412201 55413384 +
Mtr Mtr6g1993 Chr6 36380356 36382123 -
Prci Prci14g1892 Chr14 26552552 26554334 -
Pvu Pvu4g1495 Chr4 41987766 41989886 +
Rops Rops5g00503 Chr5 8571271 8572438 -
Seca Seca10g04560 Chr10 103931537 103932626 +
Sto Sto10g2734 Chr10 37537684 37538812 -
Tpr Tpr2g5168 Chr2 57822641 57825067 +
Trre Trre11g01808 Chr11 17634139 17635262 +
Tsu Tsu06g03534 Chr06 46502782 46507488 +
Vian Vian8g01312 Chr8 32086889 32088347 +
Vifa Vifa1g03652 Chr1 563719213 563720264 -
Viun Viun4g00557 Chr4 3668828 3670971 -
Vivi Vivi2g05855 Chr2 188512015 188516462 +
Vra Vra1g0769 Chr1 9055705 9059481 -
Vvi Vvi17g1107 Chr17 15526686 15527535 +
Vvi Vvi17g1108 Chr17 15529052 15532168 +
Vvi Vvi17g1109 Chr17 15548670 15549128 +
Vvi Vvi17g1110 Chr17 15551623 15552174 +
Vvi Vvi17g1111 Chr17 15569452 15573707 +
Aed Aed7g0366 Chr7 2714094 2719390 +
Apr Apr6g0922 Chr6 13693147 13697930 -
Bva Bva04g00964 Chr04 6336793 6339998 -
Cca Cca08g00386 Chr08 5971859 5977184 +
Gma Gma09g01566 Chr09 40763093 40766307 -
Lal Lal10g0920 Chr10 16591372 16592921 -
Lal Lal25g0511 Chr25 3637307 3642179 +
Lapu Lapu4g00338 Chr4 3518879 3523544 +
Lasa Lasa1g02187 Chr1 240477069 240480475 +
Lja Lja2g2311 Chr2 27607128 27608686 +
Mal Mal6g3518 Chr6 103733245 103737639 +
Mepo Mepo7g00756 Chr7 11993431 11999732 -
Mesa Mesa22g02869 Chr22 76238759 76239709 +
Mtr Mtr6g1983 Chr6 36217138 36222998 +
Pste Pste9g01365 Chr9 12403307 12406440 -
Pvu Pvu4g1501 Chr4 42050978 42055383 -
Rops Rops5g00495 Chr5 8480639 8483837 +
Seca Seca10g04567 Chr10 104043091 104047380 -
Spst Spst4g02930 Chr4 68944121 68948012 +
Tpr Tpr2g5173 Chr2 57914921 57921704 -
Trre Trre11g01813 Chr11 17755398 17756618 -
Tsu Tsu06g03550 Chr06 46696133 46702515 -
Vian Vian8g01317 Chr8 32142035 32145085 -
Vifa Vifa1g03642 Chr1 561890170 561893086 +
Vimu Vimu8g01743 Chr8 23306413 23309372 +
Viun Viun4g00550 Chr4 3616069 3620380 +
Vivi Vivi2g05864 Chr2 188651519 188656158 -
Vra Vra1g0764 Chr1 9004477 9008793 +
Vvi Vvi17g1112 Chr17 15591184 15595454 -
Apr Apr2g1620 Chr2 21927373 21930655 -
Bva Bva04g00962 Chr04 6322806 6327659 +