Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00396 ATGGAGAAACTCAGGCCAGCGTGGGCTGTCAAGGCTATCATCGTCATCAATCACACCGTCGGCGGTGCCTCCGGCTGGGACCTCCGTTCCAATATCCAGGCCTGGTCTTCTACCACAACGTTTAACATCGGTGACGATCTCGTGTTCATATACACGCCGGTTCACGACGTGGTGGAGGTGAACCAACTAGGTTACGACACGTGTTCGATAGTCGGCGCTCTGGCCACGTACGACACCGGAGAAACCGTGATCCACTTGAGCGAAGTGGGAAGCCGCTACTTCGTCTGTGGCCGATTGGGCCACTGCCAACAGGGCCTCAAACTCCAGGTCCAAGTTCCCGGTAACGGAACCAACGACGATCAAGACCAGCGTCCCGCCGCCGGCGctcctcctccacgtcaacctccgccgccttctccgccGCATGTTGATGATCCACACCCACCTGCGGAGGAGCCCTCCCCCTGCGATTGTTCCCGTGCTGAGGAGCCCTATGGGCCGAAGCCGTTGTTTACTCTCGTAATCGTCCTTGCTTGCGCTTCCGCTCGTTTCTTCATCGCTTTTCCGCGTCTCCGTTTTCATCTGATGCGTTGA 594 0.5404 MEKLRPAWAVKAIIVINHTVGGASGWDLRSNIQAWSSTTTFNIGDDLVFIYTPVHDVVEVNQLGYDTCSIVGALATYDTGETVIHLSEVGSRYFVCGRLGHCQQGLKLQVQVPGNGTNDDQDQRPAAGAPPPRQPPPPSPPHVDDPHPPAEEPSPCDCSRAEEPYGPKPLFTLVIVLACASARFFIAFPRLRFHLMR 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00396 197 ProSiteProfiles Phytocyanin domain profile. 16 114 IPR003245 GO:0009055
Cca08g00396 197 MobiDBLite consensus disorder prediction 128 144 - -
Cca08g00396 197 SUPERFAMILY Cupredoxins 17 113 IPR008972 -
Cca08g00396 197 MobiDBLite consensus disorder prediction 111 160 - -
Cca08g00396 197 Pfam Plastocyanin-like domain 30 105 IPR003245 GO:0009055
Cca08g00396 197 CDD Phytocyanin 17 112 - -
Cca08g00396 197 PANTHER COPPER ION BINDING / ELECTRON CARRIER PROTEIN-RELATED 11 120 - -
Cca08g00396 197 PANTHER BLUE COPPER PROTEIN 11 120 IPR039391 GO:0009055
Cca08g00396 197 Gene3D - 15 117 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00396 Cca-Chr8 6065578 6067098 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00396 14 153 Miscellaneous Gene Families AT2G32300 36.879 1.72e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00396 - - ccaj:109796459 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00396 08 6065578 6067098 Cca08g00396 08 6065578 6067098 ECH