Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1112 ATGAAGGGAGGTGTGAGCTTTCTCAACGCTTCCCCTATCCCTCAGTTACTACCATTACCAAACGACAGGCTCTCCATTGCCAGAGTCTATACGTCAAAACGACGTCGTCTTAGGGCGGAGATCGAACTTAGGGTTTGCGTCAACCGGACTTGCCGGAGGCAAGGTTCTCTGCAAACCCTCGAAACCCTTTCCGGCATAGCTTCCCCCGACGTCGCCGTCAAGTCTTGCGGCTGTCTCGGCCGTTGCGGCGCCGGCCCCAACCTCGTGGCGCTTCCAGACGGCGTCATCGTCGGACACTGTGGGACGGCTGCTCGTGCTGCAGAAGTTATGATGAGCTTCGTCGCCGGCGATGCTCAGGGGAGTTTGGCTGCTTTGGCATTGAGGAAGAGAGCTGAGAATGAGTTGGAAAAAAATAATTTCTCGGAGGCTGAGCTTTTGCTTTCTCAGGCTATAGATCTTAAACCATCCGGAGGTATCCATATCATATATAAAGTCAGGTCTTCTGCAAGGTTGACAATGGGCAACTATGCTGGTGCTCTGGAAGATGCTAATGAAGCTCTGACATTAGCTCCTCGATATCCTGAGGCTTATATTTGTCAGGGAGATGCTTTCTTGGCTATGGACCAGTTTGATGATGCTGAAAAATCATACTCGACATGTTTAGAGCTCGATCCCTCCATTCGTCGTTCCAAATCATTCAGGGCTCGGGTTGCAAAGCTTCAAGAGAAACTCAGTGCTGCAAGTACACGTTAA 753 0.5086 MKGGVSFLNASPIPQLLPLPNDRLSIARVYTSKRRRLRAEIELRVCVNRTCRRQGSLQTLETLSGIASPDVAVKSCGCLGRCGAGPNLVALPDGVIVGHCGTAARAAEVMMSFVAGDAQGSLAALALRKRAENELEKNNFSEAELLLSQAIDLKPSGGIHIIYKVRSSARLTMGNYAGALEDANEALTLAPRYPEAYICQGDAFLAMDQFDDAEKSYSTCLELDPSIRRSKSFRARVAKLQEKLSAASTR* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1112 250 SMART tpr_5 160 193 IPR019734 GO:0005515
Vvi17g1112 250 SMART tpr_5 194 227 IPR019734 GO:0005515
Vvi17g1112 250 SMART tpr_5 124 157 IPR019734 GO:0005515
Vvi17g1112 250 Pfam Tetratricopeptide repeat 194 226 IPR013105 -
Vvi17g1112 250 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 19 249 - -
Vvi17g1112 250 SUPERFAMILY TPR-like 124 243 IPR011990 GO:0005515
Vvi17g1112 250 CDD TRX_Fd_family 43 110 - -
Vvi17g1112 250 Gene3D Glutaredoxin 40 122 - -
Vvi17g1112 250 Gene3D Tetratricopeptide repeat domain 123 249 IPR011990 GO:0005515
Vvi17g1112 250 SUPERFAMILY Thioredoxin-like 25 114 IPR036249 -
Vvi17g1112 250 ProSiteProfiles TPR repeat profile. 194 227 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1112 Vvi-Chr17 15591184 15595454 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1112 - - vvi:100265105 488.804