Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi17g1093 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1094 Acco01g0517 . Accr1g00335 . . . Aed7g0373 . . . . . . . Alju02g3377 . . . . . Arst5g02843 . Bach1g01368 . Bisa01g0496 . . . . . Cca08g00399 . Dere06g1639 . . . Enph12g1063 . . . . . . Gma09g01558 . . . . . Lal10g0913 . . . . . . . . . . Lapu4g00346 . Lasa1g02196 . Lele45g0353 Lele46g0382 Lele47g1043 Lele48g1106 . . . . Lja2g2319 . . . . . . . Mibi01g3149 . . . . . . . Prci14g1888 . . . Pste9g01358 . Pte16g00169 . . . . . Pvu4g1492 . Rops5g00506 . Seca10g04554 . Spst4g02937 . . . . Sto10g2728 . . . . . . Vian8g01309 . . . Vimu8g01751 . . . Vivi2g05852 . . .
Vvi17g1095 . . . . Adu05g02930 . . Aed5g2675 . . . . . . . . . . Apr6g0917 Apr2g1621 Arst5g03711 . . . . . . . . . Cca08g00397 Cca09g02864 . . . . . . . . . . . Gma09g01560 . . . . . Lal10g0915 Lal25g0514 . . . . . . . . . Lapu4g00344 . Lasa1g02194 . . . . . . . . . Lja2g2317 . . . Mepo7g00736 . Mesa22g02898 . . . . Mtr6g1994 . . Phco5g00431 . . . . . Pste9g01360 . Pte16g00168 . . . . . Pvu4g1494 . Rops5g00504 . Seca10g04559 . Spst4g02935 . Ssu5g3553 . . . . Tpr2g5167 Trre11g01807 . . Tsu06g03533 Vian8g01311 . Vifa1g03657 . Vimu8g01748 . Viun4g00558 . Vivi2g05854 . . .
Vvi17g1096 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1097 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1098 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1099 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1101 . . . . . . . . . . . . . . . . . . Apr6g0919 . . . . . . . Bva04g00968 . . . . . . . . . . . . . . . . Gma09g01562 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1102 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi17g1093 Chr17 15073999 15075537 +
Vvi Vvi17g1094 Chr17 15096385 15096702 +
Acco Acco01g0517 Chr01 6215096 6215407 +
Accr Accr1g00335 Chr1 6736904 6737215 +
Aed Aed7g0373 Chr7 2773622 2775371 -
Alju Alju02g3377 Chr02 51653260 51653550 -
Arst Arst5g02843 Chr5 83856625 83857638 +
Bach Bach1g01368 Chr1 27139845 27140135 +
Bisa Bisa01g0496 Chr01 7162039 7162350 -
Cca Cca08g00399 Chr08 6085937 6089362 -
Dere Dere06g1639 Chr06 30897068 30897379 +
Enph Enph12g1063 Chr12 17584364 17586849 +
Gma Gma09g01558 Chr09 40687572 40693751 +
Lal Lal10g0913 Chr10 16552181 16552501 +
Lapu Lapu4g00346 Chr4 3592309 3592623 -
Lasa Lasa1g02196 Chr1 243464878 243465195 -
Lele Lele45g0353 Chr45 2797941 2798252 +
Lele Lele46g0382 Chr46 2549088 2549417 +
Lele Lele47g1043 Chr47 16238240 16238551 -
Lele Lele48g1106 Chr48 15794056 15795908 -
Lja Lja2g2319 Chr2 27768992 27771726 -
Mibi Mibi01g3149 Chr01 55500397 55500708 -
Prci Prci14g1888 Chr14 26473692 26476890 +
Pste Pste9g01358 Chr9 12323073 12323387 +
Pte Pte16g00169 Chr16 2015551 2017432 -
Pvu Pvu4g1492 Chr4 41963472 41966204 +
Rops Rops5g00506 Chr5 8593264 8596122 -
Seca Seca10g04554 Chr10 103850963 103851283 +
Spst Spst4g02937 Chr4 69000552 69000866 -
Sto Sto10g2728 Chr10 37478973 37479284 +
Vian Vian8g01309 Chr8 32072056 32072370 +
Vimu Vimu8g01751 Chr8 23376543 23378002 -
Vivi Vivi2g05852 Chr2 188469696 188470263 +
Vvi Vvi17g1095 Chr17 15114077 15135389 +
Adu Adu05g02930 Chr05 98730724 98735888 -
Aed Aed5g2675 Chr5 27252811 27253662 +
Apr Apr6g0917 Chr6 13640765 13644776 +
Apr Apr2g1621 Chr2 21931190 21936729 -
Arst Arst5g03711 Chr5 97408485 97413759 -
Cca Cca08g00397 Chr08 6070061 6074099 -
Cca Cca09g02864 Chr09 54274843 54279929 -
Gma Gma09g01560 Chr09 40704473 40707574 +
Lal Lal10g0915 Chr10 16560040 16561765 +
Lal Lal25g0514 Chr25 3666629 3672306 -
Lapu Lapu4g00344 Chr4 3575475 3577910 -
Lasa Lasa1g02194 Chr1 242981725 242984249 -
Lja Lja2g2317 Chr2 27749591 27753713 -
Mepo Mepo7g00736 Chr7 11720564 11725009 +
Mesa Mesa22g02898 Chr22 76929281 76933355 -
Mtr Mtr6g1994 Chr6 36389705 36393924 -
Phco Phco5g00431 Chr5 3937110 3942156 -
Pste Pste9g01360 Chr9 12342423 12346384 +
Pte Pte16g00168 Chr16 2010214 2013723 -
Pvu Pvu4g1494 Chr4 41982920 41986827 +
Rops Rops5g00504 Chr5 8574202 8584028 -
Seca Seca10g04559 Chr10 103919727 103924079 +
Spst Spst4g02935 Chr4 68984161 68990406 -
Ssu Ssu5g3553 Chr5 86777861 86783637 +
Tpr Tpr2g5167 Chr2 57816929 57820394 +
Trre Trre11g01807 Chr11 17626376 17630319 +
Tsu Tsu06g03533 Chr06 46498828 46502697 +
Vian Vian8g01311 Chr8 32082167 32084917 +
Vifa Vifa1g03657 Chr1 564564832 564568069 -
Vimu Vimu8g01748 Chr8 23359612 23364017 -
Viun Viun4g00558 Chr4 3671600 3675228 -
Vivi Vivi2g05854 Chr2 188491208 188494541 +
Vvi Vvi17g1096 Chr17 15139137 15144040 +
Vvi Vvi17g1097 Chr17 15154260 15154728 -
Vvi Vvi17g1098 Chr17 15172405 15173965 +
Vvi Vvi17g1099 Chr17 15229501 15230352 +
Vvi Vvi17g1100 Chr17 15234883 15247875 +
Vvi Vvi17g1101 Chr17 15340828 15341595 +
Apr Apr6g0919 Chr6 13652038 13654304 -
Bva Bva04g00968 Chr04 6362577 6365141 +
Gma Gma09g01562 Chr09 40716503 40719172 -
Vvi Vvi17g1102 Chr17 15353443 15354270 -