Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1106 ATGGAAGGACCGCGTCCTGTTTGGGCAGTCAAGGTGATCATGGTGATCGTGATTGCATCGATCTTCTTCCGTTGCGTCTCTGCAAGGAACCACACGGTTGGAGGACCAAACGGTTGGGATTTGGCGTCCAACCTGCAAGTCTGGTCTCGTTCTTCGACGTTTTACACCGGCGACAATCTAGTGTTCAGCTACACACCGAACCACGACGTCCTGGAGGTGAACCAGTTGGACTTCGCCAGGTGTCGCACCATCAACCCACTCGCCACCCACCGCGACGGCGAGACAGTGGTGCCGCTGACCAACGCTGGCACCAGGTTCTTCATCTGCGGCCGCCGCGGACACTGCACTAGGGGACTCAGACTTATGGTCCAAGTCCTCGATCTCCCTTCTGCAGCTCCAGCATTCCCACCAGCCGAAGAAAGTGCAGCCTCCGAACCTACCAGAAGGGAACGGGCTCCTCCGCCAGGTAAAGGGGACAAGTCGTCGCCGCCGCCGCCTGCCGCCATGGGAGCAGCACCAGCCAAGAGTCCGGGTGCTGAAGCACATTGCAGTGTAGGAGTGCGCATTGGAGGCTGGGTGTGGTGCTGTCTAGCTCTGGCTGCTGTCCTGAAGAAGAAAAGCATGAAAAGGTGA 633 0.5861 MEGPRPVWAVKVIMVIVIASIFFRCVSARNHTVGGPNGWDLASNLQVWSRSSTFYTGDNLVFSYTPNHDVLEVNQLDFARCRTINPLATHRDGETVVPLTNAGTRFFICGRRGHCTRGLRLMVQVLDLPSAAPAFPPAEESAASEPTRRERAPPPGKGDKSSPPPPAAMGAAPAKSPGAEAHCSVGVRIGGWVWCCLALAAVLKKKSMKR* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1106 210 Gene3D - 27 129 IPR008972 -
Vvi17g1106 210 ProSiteProfiles Phytocyanin domain profile. 29 127 IPR003245 GO:0009055
Vvi17g1106 210 SUPERFAMILY Cupredoxins 28 126 IPR008972 -
Vvi17g1106 210 PANTHER BLUE COPPER PROTEIN 27 152 IPR039391 GO:0009055
Vvi17g1106 210 MobiDBLite consensus disorder prediction 157 171 - -
Vvi17g1106 210 Pfam Plastocyanin-like domain 42 118 IPR003245 GO:0009055
Vvi17g1106 210 MobiDBLite consensus disorder prediction 134 178 - -
Vvi17g1106 210 FunFam Blue copper 27 131 - -
Vvi17g1106 210 CDD Phytocyanin 29 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1106 Vvi-Chr17 15501812 15503387 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1106 12 136 Miscellaneous Gene Families AT2G32300 42.857 1.55e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1106 - - vvi:100259914 358.221