Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1109 ATGAGATTCTTCTGCGAACTGCTGGAGTGGGGGATTCGAACTTGGAAGGATGAGGCAGAAAGAAGATGCAGGGTTTCTATGCGAGTTCTTCTGCTGAAACAAAGGACAATCCTCACTTGTTGCCCAGATTCTTACCGCGAAGGTCTTGGCCAATTTAGTCAAGTGATATGTGCAGCTCCTCCAGTAGAAATCTGGGAAAGATGTGACAAATTTAGAGGTTATCCCCTCAAGACCCAAGTTGGGAGAAGATTGTCTTGGCAAACGGATATGGGTATGGCTGATTTGAGAGCAACTTTTGTTAGGGGTCAGAAGCATAAACTGAGTGTTTACATACATCAGGTGTGTACTTTGATGATGTTCAATAATGCTCATCGCTTAAATGAAAAAGGAACAGGGCATGGGAGTATCCCAGACCTACAAGAAGAGGTCCTACTAGTGATGAAACTAATGATTGCTTGA 459 0.4357 MRFFCELLEWGIRTWKDEAERRCRVSMRVLLLKQRTILTCCPDSYREGLGQFSQVICAAPPVEIWERCDKFRGYPLKTQVGRRLSWQTDMGMADLRATFVRGQKHKLSVYIHQVCTLMMFNNAHRLNEKGTGHGSIPDLQEEVLLVMKLMIA* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1109 152 ProSiteProfiles Cullin family profile. 60 152 IPR016158 -
Vvi17g1109 152 Gene3D Cullin; Chain C, Domain 2 28 143 - -
Vvi17g1109 152 Pfam Cullin family 60 125 IPR001373 GO:0006511|GO:0031625
Vvi17g1109 152 SUPERFAMILY Cullin homology domain 54 127 IPR036317 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1109 Vvi-Chr17 15548670 15549128 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1109 K03869 - vvi:100254227 97.4413