Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0049 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01205 . . . . . . . . . . . . . . . . . .
Pvu10g0050 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0051 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0052 . . . Aed2g1235 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0053 Acco07g1979 . . . Aev02g1811 . . . Alju05g0219 . . . Arst2g02494 . Bisa06g0273 . . Cca01g01837 Dere11g0257 Dod07g1491 Enph10g0816 Glsi07g1972 . Gma01g01135 Gso1g0952 Gso3g0689 . . . . . . . . Lele37g1274 Lele38g1168 Lele39g0138 . . . . . Mibi04g1957 . . Phco1g01433 Prci12g0240 . Pste6g01427 . . Seca2g01630 Spst4g01300 Ssu4g2327 Sto1g2299 . . . . . . . . .
Pvu10g0054 . . Adu02g01904 . Aev02g1805 Ahy12g1988 Ahy2g1711 Aip02g02213 . Amo12g2229 Amo02g2456 Apr10g0710 Arst2g02492 . . . . Cca01g01836 . Dod07g1489 . . . Gma01g01131 Gso1g0950 Gso3g0688 Lal14g0224 . . . Lan1g0856 . Lapu10g01143 . . . . . Lja3g3297 Mal7g0321 . . . . . . . Psa7g5685 Pste6g01418 . Rops4g00944 Seca2g01634 Spst4g01301 Ssu4g2326 . . . Tsu06g00362 . Vifa2g05365 . . Vivi5g00556 .
Pvu10g0055 Acco07g1977 Accr6g01690 Adu02g01903 . Aev02g1801 Ahy12g1985 Ahy2g1710 Aip02g02212 Alju05g0221 . Amo02g2455 Apr10g0709 Arst2g02490 Bach6g01650 Bisa06g0276 Bva02g00221 . Cca01g01835 Dere11g0260 Dod07g1488 Enph10g0818 Glsi07g1969 . Gma01g01129 Gso1g0949 Gso3g0687 . . . . . . Lapu10g01144 . Lele37g1271 Lele38g1166 Lele39g0140 Lele40g1109 Lja3g3296 Mal7g0316 . . Mibi04g1955 . . Phco1g01440 . Psa7g5683 Pste6g01411 . Rops4g00943 Seca4g10735 Spst4g01303 Ssu4g2325 Sto1g2300 . . Tsu06g00361 . Vifa2g05368 Vimu9g01215 Viun10g01116 . Vra9g1005
Pvu10g0056 . . . Aed2g1253 Aev02g1765 Ahy12g1884 . . . . . Apr10g0672 . Bach6g01005 . Bva02g01465 . . . . . . . . . Gso3g0641 . Lal7g0118 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0057 . . . . . Ahy12g1859 . . . Amo12g2104 . . Arst2g02362 Bach6g01019 . Bva02g01450 Car06g02430 . . . . . Gma03g00626 . . Gso3g0615 . . . . . . . Lasa7g00490 . . . . . . . . . . . Phco1g01446 . Psa7g5430 . . . . . . . . . Tsu06g00523 . . . . Vivi5g01223 .
Pvu10g0058 . . . . . . . . . Amo12g2106 . . . Bach6g01020 . Bva02g01449 . . . . . . . . Gso1g0875 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0049 Chr10 816221 821939 +
Phco Phco1g01205 Chr1 18531274 18536945 +
Pvu Pvu10g0050 Chr10 825816 834951 +
Pvu Pvu10g0051 Chr10 831589 832170 +
Pvu Pvu10g0052 Chr10 836962 840690 +
Aed Aed2g1235 Chr2 10866861 10867694 +
Pvu Pvu10g0053 Chr10 850188 850589 -
Acco Acco07g1979 Chr07 37336312 37336689 +
Aev Aev02g1811 Chr02 19947948 19948358 +
Alju Alju05g0219 Chr05 3446794 3447171 -
Arst Arst2g02494 Chr2 79850604 79852050 +
Bisa Bisa06g0273 Chr06 6520814 6521203 -
Cca Cca01g01837 Chr01 42905088 42905848 +
Dere Dere11g0257 Chr11 4788657 4789034 -
Dod Dod07g1491 Chr07 40871588 40873374 +
Enph Enph10g0816 Chr10 10711020 10713016 -
Glsi Glsi07g1972 Chr07 63688119 63688457 +
Gma Gma01g01135 Chr01 40242695 40243355 +
Gso Gso1g0952 Chr1 38596968 38598000 +
Gso Gso3g0689 Chr3 21060815 21062045 +
Lele Lele37g1274 Chr37 21940488 21941044 +
Lele Lele38g1168 Chr38 22786075 22786452 +
Lele Lele39g0138 Chr39 900336 902364 -
Mibi Mibi04g1957 Chr04 50322524 50322907 +
Phco Phco1g01433 Chr1 48985895 48986293 -
Prci Prci12g0240 Chr12 1912982 1913491 -
Pste Pste6g01427 Chr6 6197762 6198061 +
Seca Seca2g01630 Chr2 29535489 29535863 -
Spst Spst4g01300 Chr4 49650547 49650948 -
Ssu Ssu4g2327 Chr4 55995630 55996034 +
Sto Sto1g2299 Chr1 30949100 30949483 -
Pvu Pvu10g0054 Chr10 863590 868400 +
Adu Adu02g01904 Chr02 80345938 80350525 -
Aev Aev02g1805 Chr02 19878667 19885381 -
Ahy Ahy12g1988 Chr12 102754018 102758745 -
Ahy Ahy2g1711 Chr2 88359131 88363733 -
Aip Aip02g02213 Chr02 93419533 93424131 -
Amo Amo12g2229 Chr12 101841197 101846328 -
Amo Amo02g2456 Chr02 77967463 77972135 -
Apr Apr10g0710 Chr10 17671420 17675547 -
Arst Arst2g02492 Chr2 79795900 79800323 -
Cca Cca01g01836 Chr01 42854630 42860981 -
Dod Dod07g1489 Chr07 40764888 40768694 -
Gma Gma01g01131 Chr01 40189997 40195264 -
Gso Gso1g0950 Chr1 38535551 38540998 -
Gso Gso3g0688 Chr3 21035793 21041731 -
Lal Lal14g0224 Chr14 2614082 2618720 +
Lan Lan1g0856 Chr1 19398839 19403468 +
Lapu Lapu10g01143 Chr10 13950564 13955589 +
Lja Lja3g3297 Chr3 64524468 64529466 -
Mal Mal7g0321 Chr7 7035078 7040234 -
Psa Psa7g5685 Chr7 480227018 480231594 -
Pste Pste6g01418 Chr6 6160431 6160916 -
Rops Rops4g00944 Chr4 24785123 24790356 -
Seca Seca2g01634 Chr2 29643090 29648416 +
Spst Spst4g01301 Chr4 49660194 49664763 +
Ssu Ssu4g2326 Chr4 55903122 55907768 -
Tsu Tsu06g00362 Chr06 3069013 3073653 -
Vifa Vifa2g05365 Chr2 1597997008 1598001140 +
Vivi Vivi5g00556 Chr5 9237617 9242110 -
Pvu Pvu10g0055 Chr10 889493 890908 -
Acco Acco07g1977 Chr07 37308513 37309928 +
Accr Accr6g01690 Chr6 51468377 51469804 +
Adu Adu02g01903 Chr02 80304987 80309830 +
Aev Aev02g1801 Chr02 19814102 19815532 +
Ahy Ahy12g1985 Chr12 102654287 102656073 +
Ahy Ahy2g1710 Chr2 88329647 88331417 +
Aip Aip02g02212 Chr02 93318272 93318972 +
Alju Alju05g0221 Chr05 3464306 3465730 -
Amo Amo02g2455 Chr02 77938158 77939573 +
Apr Apr10g0709 Chr10 17585886 17587981 +
Arst Arst2g02490 Chr2 79754761 79756629 +
Bach Bach6g01650 Chr6 24696420 24697817 +
Bisa Bisa06g0276 Chr06 6588991 6593519 -
Bva Bva02g00221 Chr02 3531703 3533522 +
Cca Cca01g01835 Chr01 42827474 42830034 +
Dere Dere11g0260 Chr11 4823010 4824437 -
Dod Dod07g1488 Chr07 40745367 40747944 +
Enph Enph10g0818 Chr10 10726071 10727495 -
Glsi Glsi07g1969 Chr07 63587801 63588394 +
Gma Gma01g01129 Chr01 40140651 40142668 +
Gso Gso1g0949 Chr1 38487395 38489403 +
Gso Gso3g0687 Chr3 21019993 21022044 +
Lapu Lapu10g01144 Chr10 14006317 14008356 -
Lele Lele37g1271 Chr37 21927531 21928934 +
Lele Lele38g1166 Chr38 22772963 22775718 +
Lele Lele39g0140 Chr39 910783 914181 -
Lele Lele40g1109 Chr40 21255995 21257419 +
Lja Lja3g3296 Chr3 64494262 64496072 +
Mal Mal7g0316 Chr7 6987168 6988634 +
Mibi Mibi04g1955 Chr04 50301859 50303262 +
Phco Phco1g01440 Chr1 49670290 49671693 -
Psa Psa7g5683 Chr7 480016783 480019558 -
Pste Pste6g01411 Chr6 6137899 6139534 +
Rops Rops4g00943 Chr4 24711533 24713360 +
Seca Seca4g10735 Chr4 244321992 244323419 +
Spst Spst4g01303 Chr4 49705866 49707281 -
Ssu Ssu4g2325 Chr4 55858456 55859871 +
Sto Sto1g2300 Chr1 30962132 30963562 -
Tsu Tsu06g00361 Chr06 3058794 3060733 +
Vifa Vifa2g05368 Chr2 1599466114 1599467601 +
Vimu Vimu9g01215 Chr9 19941019 19944306 +
Viun Viun10g01116 Chr10 19626549 19628570 -
Vra Vra9g1005 Chr9 12407715 12409624 +
Pvu Pvu10g0056 Chr10 935071 941741 +
Aed Aed2g1253 Chr2 11179472 11182652 +
Aev Aev02g1765 Chr02 19454088 19457412 -
Ahy Ahy12g1884 Chr12 99978108 99983221 -
Apr Apr10g0672 Chr10 16574928 16577420 -
Bach Bach6g01005 Chr6 8225981 8229089 +
Bva Bva02g01465 Chr02 17914749 17921130 -
Gso Gso3g0641 Chr3 18950607 18954888 -
Lal Lal7g0118 Chr7 1292660 1297875 -
Pvu Pvu10g0057 Chr10 958344 964997 +
Ahy Ahy12g1859 Chr12 99128737 99133057 -
Amo Amo12g2104 Chr12 98539687 98543663 -
Arst Arst2g02362 Chr2 77011125 77015286 -
Bach Bach6g01019 Chr6 8327036 8329421 +
Bva Bva02g01450 Chr02 17835047 17837937 -
Car Car06g02430 Chr06 26828300 26832534 +
Gma Gma03g00626 Chr03 19339667 19343897 -
Gso Gso3g0615 Chr3 17892545 17897423 -
Lasa Lasa7g00490 Chr7 17632174 17634803 +
Phco Phco1g01446 Chr1 50061349 50066249 +
Psa Psa7g5430 Chr7 468379769 468382502 -
Tsu Tsu06g00523 Chr06 4407918 4410896 -
Vivi Vivi5g01223 Chr5 32140727 32143850 -
Pvu Pvu10g0058 Chr10 967038 968816 +
Amo Amo12g2106 Chr12 98575799 98577059 -
Bach Bach6g01020 Chr6 8333984 8334594 +
Bva Bva02g01449 Chr02 17833045 17833739 -
Gso Gso1g0875 Chr1 35553064 35564254 -
Phco Phco1g01205 Chr1 18531274 18536945 +
Car Car06g02430 Chr06 26828300 26832534 +