Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01301 ATGAACAACTCTACAACGTTGTCTCTCTCTATAAATCCCTCTCTCTCTCCTCCTTTTCCTTCAGCTGCCGCGTTCACAACAACCCCATCTTCTTTTTCCACTTTCCCTCAGAACTCTCTTAGATTTACTTGTTTTCAATCCTTTGGGCCAAAACCCATTACTCCCTTTTGCAGAAAAGCACGATTGGGCTCTCTTCAGGGTTTAACGAGTGCGAGAAGCAGAAAAAGATTGGTGCTTGGAGCCACCAACATGACTATAGCGGAGGATAGTTTGTTGGAGGTGGTGGAGGAGGAAGAGGGTCCTCCTGATTTTTCTTTGCTTGATCCAGAGAACAGCTCTAGGCCTCGTAGAATCGCGCTCTTCGTTGAGCCTTCTCCTTTTGCGTATGTCTCAGGATACAAAAATCGGTTCCAGAATTTTATAAAATACCTTCGTGAAATGGGAGATGAGGTAATGGTTGTGACAACACATGAAGGAGTACCCAAGGAATTTTATGGAGCCAAATTAATTGGATCCCGGAGCTTCCCCTGTCCGTGGTATCAAAAGGTCCCCCTTTCTTTGGCACTGAGTCCAAGAATAATTTCTGCAGTTGCTCAGTTTAAGCCAGACATAATACATGCATCATCGCCAGGCATAATGGTGTTTGGTGCCCTCATCATCGCAAAGCTGCTAAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGTATACATTCCAAGGTACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGTCATAAAATTTCTGCATACAGCAGCTGATCTTACTCTGGTGCCATCAGCTGCCATTGGAAGGGATCTTGAAGCAGCTAGAGCAACAGCAGCTAACAAGATCCGTCTTTGGAACAAGGGTGTCGATTCTGAAAGTTTCCATCCACGATTCAAGTCCCATGAAATGAGACTAAGACTGAGCAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGTTGAGAAGAGTTTAGATTTTCTCAAAAGTCTCATGGATAGGCTTCCTGAAGCACGAATTGCCTTTATCGGAGATGGACCCTACAGGGAGGACCTAGAGAAACTGTTTGAAGGCATGCCAGCAGTGTTCACTGGGATGCTGGGAGGGGAAGAACTGTCTCAAGCATATGCAAGTGGAGATGTATTTGTTATGCCTTCTGAGTCAGAGACACTTGGCCTTGTTGTTTTGGAGGCCATGTCATCAGGGATCCCTGTGGTGGGAGCACGTGCTGGTGGCATCCCAGACATAATCCCTGAAGACCAAGATGGAAAAATTGGTTTCCTCTATACTCCGGGTGATCTTGAAGACTGTTTAAGCAAACTGAAGCCTCTTTTGGATGACAAAGAGTTGAGACAAAAAATGGGAATAACTGCACGTTTGGAGATGGAGAAGTATGATTGGAGAGCAGCCACTAGAAAAATTCGCAATGAAAATTACAATGCTGCCATTTGGTTCTGGCGCAAGAAAAGGGCTCAACTGTTGAGACCCTTTCAATGGTTGGCTCAACGAATTTTCCCGTCATCTCCTGATGAAGAAGTCACCTTGTAA 1578 0.4563 MNNSTTLSLSINPSLSPPFPSAAAFTTTPSSFSTFPQNSLRFTCFQSFGPKPITPFCRKARLGSLQGLTSARSRKRLVLGATNMTIAEDSLLEVVEEEEGPPDFSLLDPENSSRPRRIALFVEPSPFAYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPKEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISAVAQFKPDIIHASSPGIMVFGALIIAKLLSVPIVMSYHTHVPVYIPRYTFSWLVQPMWWVIKFLHTAADLTLVPSAAIGRDLEAARATAANKIRLWNKGVDSESFHPRFKSHEMRLRLSNGEPEKPLIVHVGRLGVEKSLDFLKSLMDRLPEARIAFIGDGPYREDLEKLFEGMPAVFTGMLGGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGARAGGIPDIIPEDQDGKIGFLYTPGDLEDCLSKLKPLLDDKELRQKMGITARLEMEKYDWRAATRKIRNENYNAAIWFWRKKRAQLLRPFQWLAQRIFPSSPDEEVTL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01301 525 FunFam Sulfoquinovosyl transferase SQD2 117 312 - -
Spst4g01301 525 FunFam sulfoquinovosyl transferase SQD2 313 475 - -
Spst4g01301 525 Pfam Glycosyl transferases group 1 318 469 IPR001296 GO:0016757
Spst4g01301 525 CDD GT4-like 117 487 - -
Spst4g01301 525 Gene3D Glycogen Phosphorylase B; 295 475 - -
Spst4g01301 525 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 118 485 - -
Spst4g01301 525 Gene3D Glycogen Phosphorylase B; 132 479 - -
Spst4g01301 525 PANTHER SULFOQUINOVOSYL TRANSFERASE SQD2 112 500 - -
Spst4g01301 525 Pfam Glycosyltransferase Family 4 135 298 IPR028098 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01301 Spst-Chr4 49660194 49664763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01301 1 431 Glycosyltransferase AT5G01220 72.286 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01301 K06119 - gmx:100780899 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00698 1 9136973 9141883 Spst4g01301 4 49660194 49664763 PCT