Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0856 ATGGATCACCGGAGAATGCTAACAATGAACTGGGACGGCCTCGGCGATGACGACGACGATGATCGTTTCTTCGAGACCAATAGTCGTCTCTCCACGGCCGTTGCTGTTGACCTTGCTGCTTCTTCATCTGACGATGATGATGACGATGATGATGATGATAATTTTGATGACCCGCGAATGTCCTTTGTCTCTGCTGTTTCCTCTCTGCCTTCTCGGAAACTCAGAGACAGAGCTACTGTGGCTCCTGCTATGGCTATGACACCGGATTATGAGATATGGATGGCAGCGCCTGCTTCCATCACGGAACGCCGAAAGAGATTGCTTCATGGTATGGGATTAGATGATGACAATGAATTCTTGAAAGCAAGTAGTGTTCAGCTTAGTCATGCAATTTCGAAGAAGTTTGAAGGCCACAACAACAACAAGAACAATCCTCATGTTGTTGCGTCCTCTGTTGCATTGCAGAAAAAAACAGAGCATAAAACAGAGAATAAAACAGAGCATAAAACAGAGCATAGAACAGAGGATAAAACAGAGCATTCCTCTGTTCGGTTTGTTTTGGTTCGGTCGCGTTCAGAGGGTGATATTGATTTGTTCTCAATGGAAAAGACAAGGAAAGAGGATTTTATAGGGAAGGTGTCGAAGCAGCGCCTTACGAGGATGGCATCGGAGATAGCGGTGCCTCGGGCTAGGATGACTGATGGGAGCAAAGTGGTTGTGAAGGATGGAAGAAATGAGGCAGGAGAGACAAAACAACATGGCCGGAAGGTGTCTTCGACCGCGGTGGCGGATTCTGCAGTAGGAGCATTTGTTTTGATCAAGAATTTGGATACAGGGAAGGAATTTATTGTGAACGAGTATGGAGAAAATGGGACATGGAATAAGTTTAGTGATTTGCAGACCGGGAAAAAGTTAACAAAGGAGGAGTTTGAGAAGACTGTTGGGCACTCACGCGTTGTTAATGAGCTTATGAGACGCACAAATGTCGCTGCGAGGAATGAAGGTTACTCGGGGAAACTCTCTTCGAGTTCTTACATTTCAAGGAGTTTGAGATTGAGCAAGAGAAGGGGTGCTGGATTGTTGAAGAACATAAAGGGTGTAGCGAGTGGGTTTATCGGTGATCGCGAAAGAGAGGCACGGGTGCAGATGATGCAGCAGCAGCAGCATGTGTTGGAGAATAAAGCTGCAAAGAATCAATGGGTAAGAGTTCGGCAAAGTGGAAAGTCATATAAAGAGCTCTCAGCTTTGCATTTGTGTCAAGAGTTTCAGGCTCATGATGGATGCATTTGGACCATGGAGTTTAGCTTGGATGGTCGTTATCTTGCAAGTGCTGGAGAGGATAAGGTGATTCATGTGTGGGAAGTGCAAGAATGTGAGGTTATGTCGTTGAGGCCGGAGGAAGGAAATCTTACTCCTATTCATCCCTCATTACTTGCTTCCTCCGACCGAAATGGCCACGCTGAGGCTCCGCCATTGTTTAGTGAGAAGAAGAAGAGAAGCAAATTCGGAAGCAAAAGAGGGAACACGGTTCCAGAATATGTTCATGTGCCTGAAACTGTGTTTTCCCTTTCTGAGAAACCATATTGCTCATTCCAAGGTCATTTGAATGATATTTTGGATTTGTCTTGGTCTAAATCTCAGCTACTTCTCTCCTCTTCAATGGATAAAATAGTGAGATTATGGGACTTGGACACTAAGACTTGCTTGAAGATGTTTGCTCATAATGACTATGTGACTTGCATACAATTCAATCCTATAGATGATGATTATTTCATAAGTGGTTCCCTTGATGCTAAAGTCAGAATATGGAATATTCCGGAACGTCATGTTGTCGATTGGACTGATACACATGAAATGGTTACTGCAGTTTCTTATTCACCTGATGGTCAATGTGCCCTTGTTGGTACTCATAAAGGAAGTTGCCGCACCTATAGCACTGAAGATTGCAAATTAAGCCAAACAGGCACAATCGAGATTCGACACAAGAAAAAATCTCAACTAAGAAAGGTTACTGGTTTCCAGTTTGCCCCGGGAAATCCATCGGAAGTGCTTGTTACTTCAGCTGATTCCAGGATAAGAATTTTGAATGGTTCTGAAGTTGTTCATAAGTTTAGAGGTTTTCGAAATGCAAACAGCCAAATTGCAGCTTCATTTAGTCCAGATGGAAGATATATTATCAGTGCAAGTGAAGATTCTCAAGTGTATGTTTGGAAGCATGAAGAGCATAGAAATGCAGGTTCGGGAAAAGGCAGAAATGTGCTTGTTACGCGATCTCATGAGCACTTCCAATGTAAAGATGTTTCAATTGCAATACCATGGCCTAATACCATAAAGGGTGATCCCCCACCAGTGCCAGTGCATCATTCCAAAAGGCATTCCAAACGCCATTCACCGTTTTTCGGAGATGACACTGCAGTTGGTACAAACAGTAAGAGAATACTTCCACCTCTACCTAAGAAAACTAATGCCACAGAAAGTGCCTTAAATTCCCCAACGGGTGATCCTGCAGCGATTTCGCGCTCAGAATCTGGACTTGGTGATTCATTTACAAACAGTAAGAGAGTGATTCCAACTCTTTCCAAGAAGACTAATAACTGTGCCACAGAAAGTGTCCCAACTTCCATAGAGGAAGACCCTAAAGCACTTTCGCGCACAGAATCTGGACTCGGTGATTCATTTTCAAACAATAACAGATTGTCGCCAAATATTTCTAAGAAAAGTAACCACCATAGTACAGAAAGTACGTCAACTCATATAGAGGATGAAGACCTTGATGCAACTCCGCGCACAGATTCGGGAATTGGTGATTCATTTTCACGTTCTGCCTCAGCTAGGAGTGCTGATTCACCTTCTATATCTTTTTCTGGAACTCCATTATCTGCATCTTGGTCATCCTCTTATTCATCATTTGATAGTACCAATGGTTCCGGAACAATTCATCCTTCAGCATGGGGCTTGGTAATTGTCACAGCCGGGTTTGGAGGCGAAATCAGATGTTATCAGAATTTTGGTTTACCTCGAAGGATGGGCCGGCAGGCCAATCTTTTTGGAAGTCCTACGTAA 3063 0.4362 MDHRRMLTMNWDGLGDDDDDDRFFETNSRLSTAVAVDLAASSSDDDDDDDDDDNFDDPRMSFVSAVSSLPSRKLRDRATVAPAMAMTPDYEIWMAAPASITERRKRLLHGMGLDDDNEFLKASSVQLSHAISKKFEGHNNNKNNPHVVASSVALQKKTEHKTENKTEHKTEHRTEDKTEHSSVRFVLVRSRSEGDIDLFSMEKTRKEDFIGKVSKQRLTRMASEIAVPRARMTDGSKVVVKDGRNEAGETKQHGRKVSSTAVADSAVGAFVLIKNLDTGKEFIVNEYGENGTWNKFSDLQTGKKLTKEEFEKTVGHSRVVNELMRRTNVAARNEGYSGKLSSSSYISRSLRLSKRRGAGLLKNIKGVASGFIGDREREARVQMMQQQQHVLENKAAKNQWVRVRQSGKSYKELSALHLCQEFQAHDGCIWTMEFSLDGRYLASAGEDKVIHVWEVQECEVMSLRPEEGNLTPIHPSLLASSDRNGHAEAPPLFSEKKKRSKFGSKRGNTVPEYVHVPETVFSLSEKPYCSFQGHLNDILDLSWSKSQLLLSSSMDKIVRLWDLDTKTCLKMFAHNDYVTCIQFNPIDDDYFISGSLDAKVRIWNIPERHVVDWTDTHEMVTAVSYSPDGQCALVGTHKGSCRTYSTEDCKLSQTGTIEIRHKKKSQLRKVTGFQFAPGNPSEVLVTSADSRIRILNGSEVVHKFRGFRNANSQIAASFSPDGRYIISASEDSQVYVWKHEEHRNAGSGKGRNVLVTRSHEHFQCKDVSIAIPWPNTIKGDPPPVPVHHSKRHSKRHSPFFGDDTAVGTNSKRILPPLPKKTNATESALNSPTGDPAAISRSESGLGDSFTNSKRVIPTLSKKTNNCATESVPTSIEEDPKALSRTESGLGDSFSNNNRLSPNISKKSNHHSTESTSTHIEDEDLDATPRTDSGIGDSFSRSASARSADSPSISFSGTPLSASWSSSYSSFDSTNGSGTIHPSAWGLVIVTAGFGGEIRCYQNFGLPRRMGRQANLFGSPT* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0856 1020 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 531 565 - -
Lan1g0856 1020 SMART WD40_4 415 454 IPR001680 GO:0005515
Lan1g0856 1020 SMART WD40_4 565 604 IPR001680 GO:0005515
Lan1g0856 1020 SMART WD40_4 660 696 IPR001680 GO:0005515
Lan1g0856 1020 SMART WD40_4 697 738 IPR001680 GO:0005515
Lan1g0856 1020 SMART WD40_4 606 645 IPR001680 GO:0005515
Lan1g0856 1020 SMART WD40_4 524 562 IPR001680 GO:0005515
Lan1g0856 1020 MobiDBLite consensus disorder prediction 774 956 - -
Lan1g0856 1020 MobiDBLite consensus disorder prediction 911 929 - -
Lan1g0856 1020 MobiDBLite consensus disorder prediction 887 910 - -
Lan1g0856 1020 MobiDBLite consensus disorder prediction 822 872 - -
Lan1g0856 1020 Gene3D - 508 773 IPR015943 GO:0005515
Lan1g0856 1020 ProSiteProfiles Trp-Asp (WD) repeats profile. 717 747 IPR001680 GO:0005515
Lan1g0856 1020 MobiDBLite consensus disorder prediction 932 956 - -
Lan1g0856 1020 ProSiteProfiles Trp-Asp (WD) repeats profile. 422 463 IPR001680 GO:0005515
Lan1g0856 1020 Gene3D - 371 489 IPR015943 GO:0005515
Lan1g0856 1020 ProSitePatterns Trp-Asp (WD) repeats signature. 441 455 IPR019775 -
Lan1g0856 1020 PRINTS G protein beta WD-40 repeat signature 441 455 IPR020472 -
Lan1g0856 1020 PRINTS G protein beta WD-40 repeat signature 549 563 IPR020472 -
Lan1g0856 1020 PRINTS G protein beta WD-40 repeat signature 591 605 IPR020472 -
Lan1g0856 1020 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 1011 - -
Lan1g0856 1020 PANTHER WD REPEAT DOMAIN 44 6 1011 IPR040324 -
Lan1g0856 1020 MobiDBLite consensus disorder prediction 41 56 - -
Lan1g0856 1020 SUPERFAMILY WD40 repeat-like 416 749 IPR036322 GO:0005515
Lan1g0856 1020 ProSitePatterns Trp-Asp (WD) repeats signature. 549 563 IPR019775 -
Lan1g0856 1020 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 422 456 - -
Lan1g0856 1020 ProSiteProfiles Trp-Asp (WD) repeats profile. 571 605 IPR001680 GO:0005515
Lan1g0856 1020 MobiDBLite consensus disorder prediction 155 179 - -
Lan1g0856 1020 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 571 605 - -
Lan1g0856 1020 ProSiteProfiles Trp-Asp (WD) repeats profile. 531 571 IPR001680 GO:0005515
Lan1g0856 1020 MobiDBLite consensus disorder prediction 38 57 - -
Lan1g0856 1020 MobiDBLite consensus disorder prediction 156 179 - -
Lan1g0856 1020 Pfam WD domain, G-beta repeat 420 453 IPR001680 GO:0005515
Lan1g0856 1020 Pfam WD domain, G-beta repeat 527 562 IPR001680 GO:0005515
Lan1g0856 1020 Pfam WD domain, G-beta repeat 701 738 IPR001680 GO:0005515
Lan1g0856 1020 Pfam WD domain, G-beta repeat 567 604 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0856 Lan-Chr1 19398839 19403468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0856 563 737 Miscellaneous Gene Families AT5G08390 24.176 7.87e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0856 K20241 - gmx:100779364 1141.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g1367 7 18874179 18878717 Lan1g0856 1 19398839 19403468 PCT
Lan1g0856 1 19398839 19403468 Lan7g1367 7 18874179 18878717 PCT