Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01836 ATGAACAACACTACCACctctctctatataaatccctctctctctcctccttttctctcACCTCCCACAACACCACCCTCTTCTTCTTTTTCTTCCTTCCCTCGCAGCTCTCTTAGATTTGCTTGTGTCAAGCACTTTGGACCCAAGCCCATTACACCCTTTTGCAGAAAAGCGCGATTGTGCTCTCTGCCAGGGTCAACGAGTGTCGAAAGGAGAAAAAGTTTCGTGCTTGGAGCCACCGACATGACTATAGCAGAGGATAGTTTGCTGGAGGTGGTGGAGGAGGAAGAGGGTCCTCCTGATTTTTCTTTGCTTGATCCTGAAAGCAATTCTAGGCCTCGTAGAATTGCTCTCTTTGTTGAGCCTTCTCCTTTTGCATATGTCTCGGGATACAAAAATCGTTTCCAGAATTTTATAAAATACCTTCGTGAAATGGGAGATGAGGTGATGGTTGTGACGACGCATGAAGGAGTACCCAAGGAGTTTTATGGAGCCAAATTAATTGGATCCCGAAGCTTCCCTTGTCCCTGGTATCAGAAGGTACCCCTCTCTTTAGCACTTAGTCCAAGAATAATTTCTGCGGTTGCAGAGTTTAAGCCGGACATAATACATGCATCATCGCCAGGCATAATGGTTTTTGGTGCCCTTATCATCGCAAAGCTTTTGAGTGTTCCAATTGTCATGTCATATCATACCCACGTACCAGTATATATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGTCATAAAATTTCTGCATACAGCAGCTGATCTTACTCTGGTGCCATCAGCTGCCATCGGAAGGGATCTTGAAGCAGCTAGAGCAACAGCAGCTAACAAGATTCGTCTTTGGAATAAGGGTGTTGACTCTGAAAGTTTCCATCCCAAATTCAAATCCCATGAAATGCGATTAAGACTGAGCAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTAGGAGTTGAGAAGAGTTTAGATTTTCTGAAAAGCCTCATGGATAGGCTTCCTGAAGCACGGATTGCCTTTATCGGAGATGGACCCTACAGGGAGGATCTAGAGAAGTTGTTTGAAGGCATGCCAGCAGTGTTCACAGGAATGTTAGGAGGGGAAGAACTATCCCAAGCATATGCAAGTGGAGATGTCTTTGTCATGCCTTCAGAGTCAGAGACACTTGGCCTTGTTGTTTTGGAGGCCATGTCATCAGGGATCCCTGTGGTGGGAGCACGTGCTGGTGGCATCCCTGACATAATCCCTGAAGACCAAGATGGCAAAATTGGTTACCTTTATACTCCTGGTGACCTTGAAGACTGTTTAAGCAAACTAAAGCCTCTTTTGGAAGACAAAGAGTTGAGAGAAACCATGGGAATTGCTGCAAGGTTAGAGATGGAGAAGTATGATTGGAGGGCAGCCACTAGAAAGATTCGCAATGAAAACTACAATGCTGCTATTTGGTTCTGGCGCAAGAAAAGGGCACAACTTTTGAGACCCTTTCAGTGGCTAGCTAAACGGGTCTTCCCATCCCCAGAAGTCAACTCATTGGGTGATTGA 1572 0.4459 MNNTTTSLYINPSLSPPFLSPPTTPPSSSFSSFPRSSLRFACVKHFGPKPITPFCRKARLCSLPGSTSVERRKSFVLGATDMTIAEDSLLEVVEEEEGPPDFSLLDPESNSRPRRIALFVEPSPFAYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPKEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISAVAEFKPDIIHASSPGIMVFGALIIAKLLSVPIVMSYHTHVPVYIPRYTFSWLVQPMWWVIKFLHTAADLTLVPSAAIGRDLEAARATAANKIRLWNKGVDSESFHPKFKSHEMRLRLSNGEPEKPLIVHVGRLGVEKSLDFLKSLMDRLPEARIAFIGDGPYREDLEKLFEGMPAVFTGMLGGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGARAGGIPDIIPEDQDGKIGYLYTPGDLEDCLSKLKPLLEDKELRETMGIAARLEMEKYDWRAATRKIRNENYNAAIWFWRKKRAQLLRPFQWLAKRVFPSPEVNSLGD 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01836 523 CDD GT4-like 115 485 - -
Cca01g01836 523 Gene3D Glycogen Phosphorylase B; 130 477 - -
Cca01g01836 523 PANTHER GROUP 1 FAMILY GLYCOSYLTRANSFERASE 26 519 - -
Cca01g01836 523 Pfam Glycosyl transferases group 1 316 467 IPR001296 GO:0016757
Cca01g01836 523 PANTHER SULFOQUINOVOSYL TRANSFERASE SQD2 26 519 - -
Cca01g01836 523 Gene3D Glycogen Phosphorylase B; 293 473 - -
Cca01g01836 523 Pfam Glycosyltransferase Family 4 133 296 IPR028098 -
Cca01g01836 523 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 116 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01836 Cca-Chr1 42854630 42860981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01836 73 436 Glycosyltransferase AT5G01220 81.044 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01836 K06119 - gmx:100780899 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01836 01 42854630 42860981 Cca01g01836 01 42854630 42860981 ECH
Cca07g01539 07 39826815 39831711 Cca01g01836 01 42854630 42860981 PCT