Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00556 ATGAACTCTTCTCTCTCTATAAATTCCTCTCTCTCTCCTCCTTTTCTCTCACCTCACTCCACCACCCTTTCTTCATCATCATCTTGTTCTTATTCCTTTTCCTATTCATCCAATTTCAATCCTCAAAGTTTTGTTAGATTTACATCTTTTCGAGCACAACCCATTACACCCTTTTGCAAAAAGGTTCGATTTTGGAACTTGGAAGGGATTGAGAGTGTGAAGAGACGAAAAAGTTTGAAGCTTGAAGCTACTACGAAAATGACCATTGATGAAGAGAGTTTGTTGAATGTTAGAGATGAAGAAGAGGGTCCTCCTGACTCTGTTTTGAATGACCATGAGAGTAATTCTAAACCTCGTAGAATTGCTTTGTTTGTTGAGCCTTCTCCTTTTTCATATGTCTCGGGATACAAGAATCGTTTCCAGAATTTTATAAAGTACCTCAGGGAAATGGGAGATGAGGTCTTGGTTGTAACAACACATGAAGGAGTACCTAAGGAATTTTATGGAGCACAACTAATTGGATCGAAAAGTTTCCCGTTTCCTTGGTATCAGAAGGTACCACTCTCTTTGGCACTTAGTCCAAGAATAATATCAGCAGTTGCGCAATTTAAGCCCGACATAATTCATGCTTCATCCCCCGGAATAATGGTTTTTGGTGCTCTTATCATTGCAAAGCTTCTGTCAGTTCCTATTGTCATGTCGTATCATACTCATGTACCAGTATACATTCCAAGATACACATTTAGCTGGCTAGTGCAACCGATGTGGTTGGTTCTAAAGTTTCTGCATAGAGCAGCCGATCTAACTCTAGTGCCATCGGCTGCCATTGCAAGGGATCTTGAAGAAGCTAGAGTAACAGCAGCTAACAAGATTCGTCTTTGGAACAAGGGTGTTGATTCTGAAAGTTTCAATCCTCGATACAAGTCACATGAAATGCGATTGAGACTGAGCAATGGTGAACCGGAGAAGCCCTTAATTGTTCATGTCGGACGACTTGGAGTTGAGAAGAGTTTAGATTTTCTCAAAAGTGTCATGGATAAGCTTCCTGAAGCACGAATCGCGTTTATTGGAGATGGACCTTACAGGGAGGAGTTGGAGAAATTGTTTGAAGGCATGCCTGCAGTATTCACAGGAATGTTATCAGGTGAAGAATTATCTCAAACATACGCTAGTGGCGATGTCTTTGTTATGCCGTCAGAGTCCGAGACACTTGGTCAAGTTGTCTTGGAGGCTTTGTCTTCCGGGATTCCTGTTGTTGGAGCACGTGCCGGTGGAGTACCAGACATAATCCCCGAAGATCAAGAAGGCAAAATCGGATACCTATACACTCCAGGTGATCTCGACGATTGTTTAAGCAAACTAGTACCTCTGTTGCACGACAAAGAGTTGAGAGAAACGATGGGAAGAGCCGCACGTATAGAAATGGAGAAATACGATTGGAGGGAGGCCACTAGAACGATTCGCAACAATAATTACAACGCTGCGATTTGGTTCTGGCGCAAGAAGAAAGCTCAACTATTGTTACCGTTCCAATGGCTAACGAAACGTATTTTCCCGTCAGATGTAGTAGATAACGGAAAACCGACTGAAGTTGTAATAGATAATGGAAAGCCGATCGTATAA 1623 0.4208 MNSSLSINSSLSPPFLSPHSTTLSSSSSCSYSFSYSSNFNPQSFVRFTSFRAQPITPFCKKVRFWNLEGIESVKRRKSLKLEATTKMTIDEESLLNVRDEEEGPPDSVLNDHESNSKPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVLVVTTHEGVPKEFYGAQLIGSKSFPFPWYQKVPLSLALSPRIISAVAQFKPDIIHASSPGIMVFGALIIAKLLSVPIVMSYHTHVPVYIPRYTFSWLVQPMWLVLKFLHRAADLTLVPSAAIARDLEEARVTAANKIRLWNKGVDSESFNPRYKSHEMRLRLSNGEPEKPLIVHVGRLGVEKSLDFLKSVMDKLPEARIAFIGDGPYREELEKLFEGMPAVFTGMLSGEELSQTYASGDVFVMPSESETLGQVVLEALSSGIPVVGARAGGVPDIIPEDQEGKIGYLYTPGDLDDCLSKLVPLLHDKELRETMGRAARIEMEKYDWREATRTIRNNNYNAAIWFWRKKKAQLLLPFQWLTKRIFPSDVVDNGKPTEVVIDNGKPIV 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00556 540 FunFam Sulfoquinovosyl transferase SQD2 120 315 - -
Vivi5g00556 540 Pfam Glycosyl transferases group 1 321 472 IPR001296 GO:0016757
Vivi5g00556 540 FunFam sulfoquinovosyl transferase SQD2 316 478 - -
Vivi5g00556 540 CDD GT4-like 120 485 - -
Vivi5g00556 540 Gene3D Glycogen Phosphorylase B; 316 478 - -
Vivi5g00556 540 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 121 487 - -
Vivi5g00556 540 PANTHER SULFOQUINOVOSYL TRANSFERASE SQD2 115 503 - -
Vivi5g00556 540 Pfam Glycosyltransferase Family 4 138 301 IPR028098 -
Vivi5g00556 540 Gene3D Glycogen Phosphorylase B; 120 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00556 Vivi-Chr5 9237617 9242110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00556 1 441 Glycosyltransferase AT5G01220 70.068 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00556 K06119 - gmx:100780899 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02146 6 96146828 96151336 Vivi5g00556 5 9237617 9242110 PCT