Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01143 ATGAACAACTCTACAACGTTGTCTCTCTCTATAAATCTCTCCCTCTCTCCTCCTTTTCCTTCACCTGCCACACTCACAACAGCCCCCTCTTCTTTTTCCTCTTTCCCTCAGAACTCTCTTAGATTTACTTGTTTTCAATCTTTTGGGCCAAAACCCATTGCTCCGTTTTGCAGAAAGACACGTTTGGGCTCTCTTCAGGGGTCATCGAGTGCGAAAAGTAGACAAAGTTTGGCGCTTGGAGCCACCAACATGACTATAGCAGAGGATAGTTTGTTGGAGGTGGTGGAGGAGGAAGAGGTTCCTCCTGATTTTTCTTTGCTTGATCCTGAGAACAATTCTAGGCCTCGTAGAATTGCTCTCTTCGTAGAGCCTTCTCCCTTTGCATATGTCTCAGGATACAAAAATCGTTTCCAGAATTTTATAAAATACCTTCGTGAAATGGGAGATGAGGTAATGGTTGTGACAACACATGAAGGAGTACCCAAGGAATTTTATGGAGCCAAATTAATTGGATCGCGAAGCTTCCCTTGTCCCTGGTATCAAAAGGTACCCCTTTCTTTGGCACTTAGTCCAAGAATAATTTCTGCAGTTGCTCAGTTTAAGCCAGACATAATACATGCATCATCGCCCGGAATAATGGTGTTTGGTGCCCTCATCATTGCAAAGCTGCTAAGTGTTCCTATTGTCATGTCTTATCACACCCACGTACCAGTATACATTCCAAGATACACCTTTAGCTGGTTGGTGCAACCCATGTGGTGGGTCATAAAATTTCTGCATACAGCAGCTGATCTTACTCTGGTGCCGTCAGCTGCCATTGGAAGGGATCTTGAAGCAGCTAGAGCAACAGCAGCTAACAAGATCCGTCTTTGGAACAAGGGTGTTGATTCTGAAAGTTTCCATCCACGATTCAAGTCCCATGAAATGAGACTAAGACTGAGCAATGGTGAACCTGAGAAGCCCTTAATAGTTCACGTTGGACGGCTTGGAGTTGAGAAGAGTTTAGATTTTCTCAAAAGTCTCATGGATAGGCTTCCTGAAGCACGAATTGCCTTTATTGGAGATGGACCCTACAGGGAGGACCTAGAGAAACTGTTTGAAGGCATGCCAGCAGTGTTCACCGGAATGCTTGGAGGGGAAGAACTATCTCAAGCATATGCAAGTGGAGATGTCTTTGTTATGCCTTCAGAGTCAGAGACACTTGGTCTTGTTGTTTTGGAGGCCATGTCATCTGGGATCCCTGTGGTGGGAGCTCGTGCTGGTGGCATCCCAGACATAATCCCTGAAGACCAAGATGGAAAAATTGGTTTCCTCTATACTCCAGGTGATCTAGAAGATTGTTTGAGCAAACTGAAACCTCTTTTGGATGACAAGGAGTTGAGACAAACAATGGGAATAACTGCACGTTTGGAGATGGAGAAGTATGATTGGAGGGCAGCAACTAGAAAGATCCGCAATGAAAATTACAATGCTGCCATTTGGTTCTGGCGCAAGAAAAGGGCTCAACTATTGAGACCCTTTCAATGGTTGGCTCAACGAATTTTCCCATCATCTCCTGATGAAGAAGTAAGCTAA 1575 0.4463 MNNSTTLSLSINLSLSPPFPSPATLTTAPSSFSSFPQNSLRFTCFQSFGPKPIAPFCRKTRLGSLQGSSSAKSRQSLALGATNMTIAEDSLLEVVEEEEVPPDFSLLDPENNSRPRRIALFVEPSPFAYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPKEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISAVAQFKPDIIHASSPGIMVFGALIIAKLLSVPIVMSYHTHVPVYIPRYTFSWLVQPMWWVIKFLHTAADLTLVPSAAIGRDLEAARATAANKIRLWNKGVDSESFHPRFKSHEMRLRLSNGEPEKPLIVHVGRLGVEKSLDFLKSLMDRLPEARIAFIGDGPYREDLEKLFEGMPAVFTGMLGGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGARAGGIPDIIPEDQDGKIGFLYTPGDLEDCLSKLKPLLDDKELRQTMGITARLEMEKYDWRAATRKIRNENYNAAIWFWRKKRAQLLRPFQWLAQRIFPSSPDEEVS* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01143 524 FunFam Sulfoquinovosyl transferase SQD2 117 312 - -
Lapu10g01143 524 Gene3D Glycogen Phosphorylase B; 132 479 - -
Lapu10g01143 524 Gene3D Glycogen Phosphorylase B; 295 475 - -
Lapu10g01143 524 PANTHER SULFOQUINOVOSYL TRANSFERASE SQD2 113 500 - -
Lapu10g01143 524 CDD GT4-like 117 487 - -
Lapu10g01143 524 Pfam Glycosyltransferase Family 4 135 298 IPR028098 -
Lapu10g01143 524 Pfam Glycosyl transferases group 1 318 469 IPR001296 GO:0016757
Lapu10g01143 524 FunFam sulfoquinovosyl transferase SQD2 313 475 - -
Lapu10g01143 524 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 118 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01143 Lapu-Chr10 13950564 13955589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01143 5 431 Glycosyltransferase AT5G01220 73.023 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01143 K06119 - gmx:100780899 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01864 1 31796313 31800991 Lapu10g01143 10 13950564 13955589 PCT