Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01223 ATGGACCGTGCTTCTGACAAACAACATCAGCAGCAGCAGCAGTTGTCTTTGGCAAAGAATGGCAGACAGAGATACAATGAATGGATTTTTCGCGATGTACCGAGCGATATAACTATAGAAGTGTGTGGAGTAACATTTTCATTACACAAGTTTCCTCTCGTTTCTCGAAGTGGAAGAATTCGAAGACTAGTTGCAGAACACCGAGATTCTGATATCTCAAGAGTGGAGCTTCTTAATCTTCCAGGAGGAGCTGAATGCTTTGAACTGGCTGCCAAATTCTGTTACGGCATTAACTTCGAGATCACGTCCACGAATGTTGCACAACTATGTTGCGTGTCCGACTACCTCGAAATGACCGATGATTTCTCAAAAGACAATCTTGGTTCGAGAGCCGAGGAATATCTCGACTGTATAGTCTGCAAGAATCTTGAAATGTGTGTTGAAGTGTTGCAACAATGCGAAAGTTTAATTCCTTTAGCCGATGAGCTGAAAATAGTTACGCGTTGCATTGACGCGATAGCTTCGAAAACTTGCGCCGAACAAATTGCTTCTAGTTTCTCGAGATTAGAGTATAGCAGCTCGGGCAGGTTGCACATGAGCAGGCAAGCGAAATGTGATGGTGATTGGTGGATAGAAGATATTTCGGTTTTAAGGATCGACATGTATCAACGAGTCATAACAGCAATGAAGTGTCGCGGCGTTCGGCCAGAAAGTATCGGTGCTTCTCTTGTGAACTATGCAGAAAAAGAATTGACGAAGAAACCGGCTTTGTGGAACCAATCTAGCCAGAATAAAACTGACTCAAATTCAACTTTGCATGAAAAGCTCGTCGTGGAGACTATCGTAAGCCTTTTGCCAGTTGAGAAACTAGTCGTTCCGATTCATTTCCTTTTCGGGCTTCTGCGAAGCGCGGTGATGCTTGATTGCGCGATTTCCTCTAGACTTGACTTGGAAAGAAGGATTGGATCGCAGTTGGATCTATCAACGCTTGACGATATTTTGATTCCGTCTTTCAAGCATTCGGGTGATACGTTATTTGATGTTGACACAGTTCATAGACTTCTAGTAAACTTCAGTCAGCAGGATGATAGCGATGATGATCTAGAAGACGGTTCTCTTTTCGAATCCGATAGCCCTCATTCGCCCTCGCAAACTTCGTTAGTTAAGGTGTCGAAATTAGTCGACAACTACCTCGCTGAAATTGCACCTGATGCAAACTTGAAGCTTTCTAAGTTTTTGGTCATTGCAGAAACATTGCCAGCACACGCGCGTACCGTTCATGACGGCTTATATCGAGCTATCGATATTTACTTAAAAGCTCATCAAGGTTTATCAGACTTGGACAAGAAGAAACTATGCAAACTGATTGATTTTCAAAAGCTTACTCAAGAAGCTGGAGCGCACGCGGCGCAAAACGAGCGTCTTCCTCTACAATCAATAGTGCAAGTTCTATATTTCGAACAACTAAAGCTAAGAAATTCGTTGTCCACAACCGGGGACGATGACATCAAGCCAATGCATGCGTCGTGGCGCATAAGTAGCGGTGCACTAAGTGCAGCGATGTCTCCACGCGATAATTACGCATCACTGAGGCGCGAAAACCGTGAGTTAAAACTCGAATTGGCTCGACTAAGAATGAGACTAAATGATCTGGAGAGGGAGCATGTCTGCATGAAGAGGGATATGGCGAAATCAGGATCGCGTAAATTTATGAGTTCTTTTTCGAAAAAAATTAGTAGGCTTAGTCTCTTTGGACATAGTTCTTCTAGAGAAACAAGTTCTCCATCAAGGAATTCTCATAGAACAGATTCAAAGGTGATTGAGAGAACTTGTGCTAGCACAGAATAG 1848 0.4324 MDRASDKQHQQQQQLSLAKNGRQRYNEWIFRDVPSDITIEVCGVTFSLHKFPLVSRSGRIRRLVAEHRDSDISRVELLNLPGGAECFELAAKFCYGINFEITSTNVAQLCCVSDYLEMTDDFSKDNLGSRAEEYLDCIVCKNLEMCVEVLQQCESLIPLADELKIVTRCIDAIASKTCAEQIASSFSRLEYSSSGRLHMSRQAKCDGDWWIEDISVLRIDMYQRVITAMKCRGVRPESIGASLVNYAEKELTKKPALWNQSSQNKTDSNSTLHEKLVVETIVSLLPVEKLVVPIHFLFGLLRSAVMLDCAISSRLDLERRIGSQLDLSTLDDILIPSFKHSGDTLFDVDTVHRLLVNFSQQDDSDDDLEDGSLFESDSPHSPSQTSLVKVSKLVDNYLAEIAPDANLKLSKFLVIAETLPAHARTVHDGLYRAIDIYLKAHQGLSDLDKKKLCKLIDFQKLTQEAGAHAAQNERLPLQSIVQVLYFEQLKLRNSLSTTGDDDIKPMHASWRISSGALSAAMSPRDNYASLRRENRELKLELARLRMRLNDLEREHVCMKRDMAKSGSRKFMSSFSKKISRLSLFGHSSSRETSSPSRNSHRTDSKVIERTCASTE 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01223 615 PANTHER OS12G0117600 PROTEIN 32 595 IPR043454 -
Vivi5g01223 615 Pfam NPH3 family 208 465 IPR027356 -
Vivi5g01223 615 Gene3D Potassium Channel Kv1.1; Chain A 10 152 IPR011333 -
Vivi5g01223 615 MobiDBLite consensus disorder prediction 362 384 - -
Vivi5g01223 615 ProSiteProfiles BTB domain profile. 35 103 IPR000210 GO:0005515
Vivi5g01223 615 Pfam BTB/POZ domain 34 120 IPR000210 GO:0005515
Vivi5g01223 615 Coils Coil 527 561 - -
Vivi5g01223 615 ProSiteProfiles NPH3 domain profile. 208 490 IPR027356 -
Vivi5g01223 615 SUPERFAMILY POZ domain 19 120 IPR011333 -
Vivi5g01223 615 MobiDBLite consensus disorder prediction 585 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01223 Vivi-Chr5 32140727 32143850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01223 26 564 EF-hand Containing Proteins AT3G44820 35.377 4.24e-113 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01223 - - gmx:100809104 1044.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02032 6 91523012 91525946 Vivi5g01223 5 32140727 32143850 PCT