Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00944 ATGAACCCTACGTCTCTTTCTATAAATCCCTTTCTCTCTCCTCCTTTACATTCACCTGCTACTACCACGCCTTCTTCTTCTTCTTCTTCTTCTTCATACCCTCAGAGTTCTGCTAGATTTGGTGGAATCCAATCATTTGGAGCAAAACCCATTTCACCCTTTTGCGGAAAAGCTCGATTTTGTTCTTTGCAAGGGTCAAAGAGTGTGAGAAGTAGGAAAAGTTTGGTGTTTGGAGCTACCAACATGACTATAGCTGAGGATAGTCTGCTAAATGGGGTGGAGGAGGAAGATGGTCCTCCTGATTCTGCTTTGATTGATCCTGAGGACAATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGCATATGTCTCAGGATACAAAAATCGTTTTCAGAATTTTATAAAATACCTTCGTGAAATGGGAGATGAGGTGATGGTTGTGACAACACATGAAGGAGTACCTGAGGAATTTTATGGAGCCAAATTAATTGGATCCCGGAGTTTTCCTTGTCCATGGTATCAGAAGGTACCTCTCTCTTTGGCACTTAGTCCAAGAATAATTTCAGCGGTTGCCCAGTTTAAGCCTGACATAATACATGCATCATCACCAGGCATAATGGTTTTTGGTGCTCTTATCATTGCAAAGCTTCTGTGTGTTCCTATTGTCATGTCTTATCATACCCACGTACCAGTGTACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGTCATAAAATTTCTGCATAGAGCAGCTGATCTGACCCTGGTGCCATCAGCTGCAATTGGAAAGGATCTTGAAGCAGCTAGAGTAACAACAGCTAACAAGATTCGTCTTTGGAACAAGGGTGTTGATTCTGAAAGTTTCCATCCCCGACACAACTCTTATGAAATGCGATTAAGACTGAGCAATGGTGAACCCGGGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGTTGAGAAGAGTTTAGATTTTCTCAAAAGGCTCATGGATAGGCTTCCTGAAGCACGAATTGCTTTTATTGGAGATGGACCCTACAGGGAGGAGCTGGAGAAAATGTTTGAAGGCATGCCTGCAGTATTCACAGGAATGTTAGGAGGGGAAGAACTATCCCAAGCATATGCCAGTGGAGATGTCTTTGTTATGCCTTCAGAATCAGAGACACTTGGGCTTGTTGTCTTAGAGGCCATGTCTTCAGGGATTCCTGTGGTGGGAGCACGTGCTGGTGGAATCCCAGATATAATACCAGAAGATCAAGATGGCAAAATTGGCTTTCTCTATACACCAGGTGATATTGAAGACTGCTTGAGCAAGTTAAAGCCTCTGTTGCATGACAATGAGTTGAGAGAAACAATGGGAAAAGCTGCACGTTTAGAGATGGAGAAGTATGATTGGAGGGCAGCCACTAAAAAAATTCGAAATGAAAATTACAATGCTGCCATTTGGTTCTGGCGCAAGAAAAGGGCTCAATTGTTGAGACCATTTCAATGGCTAGCTAAACGTATTTTTCCATCTCCAGAAGTTGTATAG 1560 0.4327 MNPTSLSINPFLSPPLHSPATTTPSSSSSSSSYPQSSARFGGIQSFGAKPISPFCGKARFCSLQGSKSVRSRKSLVFGATNMTIAEDSLLNGVEEEDGPPDSALIDPEDNSRPRRIALFVEPSPFAYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPEEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISAVAQFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVQPMWWVIKFLHRAADLTLVPSAAIGKDLEAARVTTANKIRLWNKGVDSESFHPRHNSYEMRLRLSNGEPGKPLIVHVGRLGVEKSLDFLKRLMDRLPEARIAFIGDGPYREELEKMFEGMPAVFTGMLGGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGARAGGIPDIIPEDQDGKIGFLYTPGDIEDCLSKLKPLLHDNELRETMGKAARLEMEKYDWRAATKKIRNENYNAAIWFWRKKRAQLLRPFQWLAKRIFPSPEVV* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00944 519 MobiDBLite consensus disorder prediction 1 36 - -
Rops4g00944 519 FunFam sulfoquinovosyl transferase SQD2 311 473 - -
Rops4g00944 519 FunFam Sulfoquinovosyl transferase SQD2 115 310 - -
Rops4g00944 519 CDD GT4-like 115 485 - -
Rops4g00944 519 Pfam Glycosyltransferase Family 4 133 296 IPR028098 -
Rops4g00944 519 Pfam Glycosyl transferases group 1 316 468 IPR001296 GO:0016757
Rops4g00944 519 PANTHER SULFOQUINOVOSYL TRANSFERASE SQD2 111 498 - -
Rops4g00944 519 Gene3D Glycogen Phosphorylase B; 293 473 - -
Rops4g00944 519 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 116 483 - -
Rops4g00944 519 Gene3D Glycogen Phosphorylase B; 130 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00944 Rops-Chr4 24785123 24790356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00944 45 436 Glycosyltransferase AT5G01220 74.873 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00944 K06119 - gmx:100780899 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01880 8 42702246 42707002 Rops4g00944 4 24785123 24790356 PCT