Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3297 ATGATCAACTCTACGTCTCTCTCTATAAATCCCTCTCTCTCTCCTCCTTTTCATTCACCTGCCACAACCACAACAACAACATCATCATCATCAACAACCCCTTCTTCATCTGCTTCTTTCCCTTCACACCCTCCTCAGATTTCTGCTAGATTTCATCTGTTTGGAGCAAAACCCATCACCCCTTTTTGCAGAAAAGGTCTGTTGTACCCTTTTCAAGGGTCAGAGAGTGTGAGAAGCAGAAAAAGTTTGGTTGTTGGAGCTGCTGCCAAAATGACCATAGATGATGATAGCTTGCTACATGCGAATGAGGATGAAGAGAATCCTCCAGAGTCTGTTTTGCTTGACCTTGAGAACTGTTCCAAGCCTCGCAGAATCGCTCTCTTCGTTGAGCCTTCTCCTTTTGCATATGTCTCAGGATACAAAAATCGTTTTCAGAATTTCATTAAATACCTTCGAGAAATGGGAGATGAGGTATTGGTTGTGACAACACATGAAGGAGTGCCCGCAGAATTTTATGGAGCCAAATTAATTGGATCCCGCAGCTTCCCTTTACCCTGGTATCAGAATGTACCCCTCTCTTTGGCACTTAGTCCAAGAATAATTTCAGCAGTTGCCCAGTTTAAGCCTGACATAATACACGCATCATCGCCAGGCATAATGGTTTTTGGTGCTCTTATCATTGCAAAGCTTCTGTCTGTTCCTATTGTGATGTCCTACCATACTCATGTACCAGTATACATCCCAAGATACACCTTTAGCTGGCTGGTTCAACCCATGTGGTTGGTCATAAAGTTTCTGCATAGAGCAGCTGACCTAACCCTGGTGCCATCAGCTGCCATTGGAAGGGATCTTGAAGCTGCTAAAGTTACAGCGGCTAACAAGATTCGTCTTTGGAACAAGGGGGTTGATTCTGAAAGTTTCCATCCCCGATTCAAGTCTCCTGAAATGAGATCAAGATTGAGCAATGGTGAACCTGAGAAGCCATTGATAGTTCATGTTGGACGGATTGGAGTTGAGAAGAGTTTAGATTTTCTCAAAAGTCTCATGGATAGGCTTCCTGAAGCAAGAATTGCTTTTATTGGAGATGGACCCTACAGGGAGGAGCTGGAGAAATTGTTTGAAGGCATGCCTGCAGTATTCACAGGAATGCTAGGAGGTGAAGAGCTATCTCAGGCATATGCTAGTGGAGATGTCTTTGTCATGCCTTCAGAGTCAGAGACACTTGGGCTAGTTGTCTTGGAAGCCATGTCTTCTGGAATTCCAGTGGTTGGAGCGCGCGCCGGTGGAATCCCGGACATCATCCCTGAAGACCAAGATGGCAAAATCGGCTATCTCTACACTCCAGGTGATCTTGAAGACTGCTTGAGCAAGTTAGTGCCTCTGCTGCAAGACAAGGAGTTAAGAGAAACCATGGGAGAAGCTGCGCGTTTGGAGATGGAAAAGTATGATTGGAGGGCCGCCACGAAGAAGATTCGCAATGAAAATTACAATGCCGCCATTTGGTTCTGGCGCAAGAAAAGGGCTCAACTGTTGAGACCATTCCAGTGGCTAGCGAAACGCGTTTTCCCATCTCCAGAAGTCGTATAG 1587 0.4549 MINSTSLSINPSLSPPFHSPATTTTTTSSSSTTPSSSASFPSHPPQISARFHLFGAKPITPFCRKGLLYPFQGSESVRSRKSLVVGAAAKMTIDDDSLLHANEDEENPPESVLLDLENCSKPRRIALFVEPSPFAYVSGYKNRFQNFIKYLREMGDEVLVVTTHEGVPAEFYGAKLIGSRSFPLPWYQNVPLSLALSPRIISAVAQFKPDIIHASSPGIMVFGALIIAKLLSVPIVMSYHTHVPVYIPRYTFSWLVQPMWLVIKFLHRAADLTLVPSAAIGRDLEAAKVTAANKIRLWNKGVDSESFHPRFKSPEMRSRLSNGEPEKPLIVHVGRIGVEKSLDFLKSLMDRLPEARIAFIGDGPYREELEKLFEGMPAVFTGMLGGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGARAGGIPDIIPEDQDGKIGYLYTPGDLEDCLSKLVPLLQDKELRETMGEAARLEMEKYDWRAATKKIRNENYNAAIWFWRKKRAQLLRPFQWLAKRVFPSPEVV* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3297 528 Pfam Glycosyl transferases group 1 325 477 IPR001296 GO:0016757
Lja3g3297 528 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 125 492 - -
Lja3g3297 528 Gene3D Glycogen Phosphorylase B; 319 482 - -
Lja3g3297 528 Gene3D Glycogen Phosphorylase B; 124 318 - -
Lja3g3297 528 PANTHER GROUP 1 FAMILY GLYCOSYLTRANSFERASE 31 527 - -
Lja3g3297 528 MobiDBLite consensus disorder prediction 1 43 - -
Lja3g3297 528 PANTHER SULFOQUINOVOSYL TRANSFERASE SQD2 31 527 - -
Lja3g3297 528 CDD GT4-like 124 494 - -
Lja3g3297 528 Pfam Glycosyltransferase Family 4 142 305 IPR028098 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3297 Lja-Chr3 64524468 64529466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3297 2 445 Glycosyltransferase AT5G01220 70.045 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3297 K06119 - gmx:100780899 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3297 3 64524468 64529466 Lja3g3297 3 64524468 64529466 ECH
Lja1g3417 1 42611742 42619596 Lja3g3297 3 64524468 64529466 PCT