Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2326 ATGACTATAGCAGAGGATAGTTTGTTGGAGGTGGTGGAGGAGGAAGAGGGTCCTCCTGAGTCTGCTTTGTTTGATCCTGAGAACAATTCTAGGCCTCGTAGGATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGCATATGTCTCAGGATACAAAAATCGTTTccagaattttataaaatacctTCGTGAAATGGGAGATGAGGTGATGGTTGTGACAACACATGAAGGAGTACCCAAGGAATTTTATGGAGCCAAATTAATTGGATCCCGAAGCTTCCCCTGTCCCTGGTATCAGAAGGTACCCCTCTCTTTGGCACTTAGTCCAAGAATAATTTCTGCAGTTGCTGAGTTTAAGCCTGACATAATACATGCGTCATCGCCAGGCATAATGGTGTTTGGTGCCCTTATCATTGCAAAGCTTCTGAGCGTTCCCATTGTCATGTCCTATCACACCCACGTACCAGTATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGTCATAAAATTTCTGCATACAGCAGCTGATCTTACCCTGGTACCATCAGCTGCCATTGGAAGGGATCTTGAAGCAGCTAGAGCAACAGCAGCTAACAAGATTCGTCTTTGGAACAAGGGTGTTGATTCTGAAAGTTTCCATCCCCAATTCAAATCCCACGAAATGCGATTAAGACTGAGCAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGTGGAGAAGAGTTTAGATTTTCTCAAAAGTCTCATGGACAGGCTTCCAGAAGCACGAATTGCCTTTATAGGGGATGGACCCTACAGGGAGGAACTAGAGAAAATGTTTGAAGGCATGCCAGCAGTGTTCACAGGAATGTTAGGAGGGGAAGAGCTATCTCAAGCATATGCAAGTGGAGATGTCTTTGTCATGCCTTCAGAGTCAGAGACACTTGGCCTTGTTGTTTTGGAGGCCATGTCATCTGGAATCCCTGTGGTGGGAGCACGCGCTGGTGGCATCCCAGACATAATCCCTGAAGATCAAGATGGCAAAATTGGTTACCTCTATACTCCAGGTGACCTTGAAGACTGCTTGAGCAAACTAAAACCTCTTTTGCATGACCAAGAGTTGAGAGAAACCATGGGAAAAGCTGCACGTGTAGAGATGGAGAAGTATGATTGGAGGGCAGCCACTAGAAAGATTCGCAATGAAAATTACAATGCTGCCATTTGGTTCTGGCGCAAGAAAAGGGCTCAACTGTTGAGACCCTTTCAGTGGCTAACTGAACGGATTTTCCCATCCCCAGAAGTCAACTCATAG 1320 0.4545 MTIAEDSLLEVVEEEEGPPESALFDPENNSRPRRIALFVEPSPFAYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPKEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISAVAEFKPDIIHASSPGIMVFGALIIAKLLSVPIVMSYHTHVPVYIPRYTFSWLVQPMWWVIKFLHTAADLTLVPSAAIGRDLEAARATAANKIRLWNKGVDSESFHPQFKSHEMRLRLSNGEPEKPLIVHVGRLGVEKSLDFLKSLMDRLPEARIAFIGDGPYREELEKMFEGMPAVFTGMLGGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGARAGGIPDIIPEDQDGKIGYLYTPGDLEDCLSKLKPLLHDQELRETMGKAARVEMEKYDWRAATRKIRNENYNAAIWFWRKKRAQLLRPFQWLTERIFPSPEVNS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2326 439 PANTHER SULFOQUINOVOSYL TRANSFERASE SQD2 9 438 - -
Ssu4g2326 439 Pfam Glycosyl transferases group 1 235 386 IPR001296 GO:0016757
Ssu4g2326 439 PANTHER GROUP 1 FAMILY GLYCOSYLTRANSFERASE 9 438 - -
Ssu4g2326 439 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 35 402 - -
Ssu4g2326 439 CDD GT4-like 34 404 - -
Ssu4g2326 439 Gene3D Glycogen Phosphorylase B; 34 234 - -
Ssu4g2326 439 Gene3D Glycogen Phosphorylase B; 239 397 - -
Ssu4g2326 439 Pfam Glycosyltransferase Family 4 52 215 IPR028098 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2326 Ssu-Chr4 55903122 55907768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2326 7 355 Glycosyltransferase AT5G01220 81.089 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2326 K06119 - gmx:100780899 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2326 4 55903122 55907768 Ssu4g2326 4 55903122 55907768 ECH
Ssu3g1162 3 27641008 27645776 Ssu4g2326 4 55903122 55907768 PCT