Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01854 ATGCTCCACACCCACCACCATTGGTTTCATCTCTTTAACGTTCCCAAAATCCCAAACTTTCCACCACTCTTCCAAACAAGGTTTTTCACCACTTCCTCTTCCGTATTGGATCTCTGCACCAAACCACAGTACCTTCAACAGCTCCATGCGAGGTTCTTCCTCCATGGCCTCCACCAAAACTCATCTCTTTCCTCCAAACTCATGGATTGCTATGCCAAGTTTGGACTCCTGAACACATCCCAGAGACTTTTCCACTTCACTGAAAACCCAGATTCTGTTCTCTACAGTGCAATATTGAGAAACTTGCATCAGTTTGGTGAATATGAGAAGACCCTCTTGCTGTACAAACAGATGGTTGGGAAATCCATGTACCCAGATGAAGAAAGTTGCTCTTTTGCTTTGAGATCTGGCTCTTCTGTGTCTCATGAACATGGGAAAATGGTTCATGGGCAGATAGTGAAACTGGGTTTGGATGCATTTGGCTTGGTTGGAAAATCTTTGATAGAGTTGTATGACATGAATGGTTTGCTGAATGGGTATGAGTCAATCGAAGGAAAGTCTGTGATGGAATTGAGTTATTGGAATAACTTGATTTTTGAGGCATGTGAAAGTGGGAAAATGGTGGAAAGCTTTCAACTCTTTTGTAGGATGAGAAAAGAGAATGTCCAACCTAATTCTGTTACCGTGATTAACTTGTTAAGGTCCACTGCTGAATTGAACTCATTGAAGATAGGACAAGCCCTCCATGCTGTGGTTGTTTTGAGCAACTTGTGTGAGGAACTAACTGTGAATACTGCACTGTTGTCAATGTATGCAAAGTTGGGTAGTCTTGAAGATGCAAGAATGCTGTTTGAGAAAATGCCTGAGAAGGACCTTGTAGTCTGGAACATAATGATTTCAGCATATGCGGGGAATGGATGCCCCAAGGAGTCCTTAGAACTTGTATACTGTATGGTTAGATTAGGTTTTAGACCTGACTTGTTTACGGCAATCCCTGCAATTTCTTCGGTCACACAATTGAAGTATAAGGAATGGGGAAAGCAAATGCATGCTCATGTGATAAGAAATGGCTCAGATTATCAGGTATCGATTCACAATTCTCTTGTTGACATGTATTCTGTGTGCGATGACTTGAATTCAGCACAGAAGATTTTTGGCTTGATAATGGACAAGACCGTGGTTTCATGGAGTGCAATGATCAAAGGATGTGCAATGCATGACCAACCTCTTGAGGCTCTGTCTCTATTCTTGAAAATGAAGTTGAGTGGTACTAGAGTTGACTTCATTATAGTCATCAACATCTTGCCAGCCTTTGCAAAAATAGGGGCATTGCATTATGTAAGTTACTTACACGGTTACTCACTGAAAACCAGCCTTGATTCACTCAAATCCCTGAAGACATCGTTTCTTACTAGCTATGCTAAGTGTGGTTGCATAGAAATGGCCAAAAAGCTTTTTGATGAAGAGAAAAGTATCCATAGAGATATAATTGCTTGGAACTCTATGATCAGTGCGTATTCTAAACATGGAGAGTGGTTTAGATGTTTTCAGTTGTACAGCCAAATGAAACTATCAAACGTTAAACTGGACCAAGTAACATTTCTGGGGCTGCTTACAGCTTGTGTTAACTCGGGCCTTGTTAGTAAAGGCAAGGAGATTTTCAAGGAAATGGTGGAAATATATGGTTGCCAACCTAGTCAGGAACACCATGCTTGTATGGTTGATCTACTAGGGCGCGCTGGCCAAATTGATGAGGCCAATGAAATAATAAAAACTGTTCCATTGGAGTCAGATGCCAGGGTTTATGGCCCCTTGTTGAGTGCCTGTAAGATACACTCAGAGACCCGTGTAGCAGAACTTGCTGCTGAGAAGCTCATAAATATGGAACCTAAAAATGCTGGAAACTATGTACTGCTCTCTAATATATATGCTGCAGCAGGAAAGTGGGACAAAGTTGCTAAAATGAGGAGTTTTCTTAGAGATAGAGGTCTAAAGAAAACACCAGGTTATAGCTGGCTTGAGTTAAATGGACAAGTTCATGAGTTTCGTGTTGCAGATCAATCTCATCCAAGATGGGAGGATATTTATTCAATATTAAAAGTGCTGGAGTTGGAAGCGGGGGATATGGAGGATGATCTTGAACTCTTTGACCCTTCTGTTATTAAGGGGTGTGAATTGCACATGAATCAACTCAACCAACTTTAA 2205 0.4118 MLHTHHHWFHLFNVPKIPNFPPLFQTRFFTTSSSVLDLCTKPQYLQQLHARFFLHGLHQNSSLSSKLMDCYAKFGLLNTSQRLFHFTENPDSVLYSAILRNLHQFGEYEKTLLLYKQMVGKSMYPDEESCSFALRSGSSVSHEHGKMVHGQIVKLGLDAFGLVGKSLIELYDMNGLLNGYESIEGKSVMELSYWNNLIFEACESGKMVESFQLFCRMRKENVQPNSVTVINLLRSTAELNSLKIGQALHAVVVLSNLCEELTVNTALLSMYAKLGSLEDARMLFEKMPEKDLVVWNIMISAYAGNGCPKESLELVYCMVRLGFRPDLFTAIPAISSVTQLKYKEWGKQMHAHVIRNGSDYQVSIHNSLVDMYSVCDDLNSAQKIFGLIMDKTVVSWSAMIKGCAMHDQPLEALSLFLKMKLSGTRVDFIIVINILPAFAKIGALHYVSYLHGYSLKTSLDSLKSLKTSFLTSYAKCGCIEMAKKLFDEEKSIHRDIIAWNSMISAYSKHGEWFRCFQLYSQMKLSNVKLDQVTFLGLLTACVNSGLVSKGKEIFKEMVEIYGCQPSQEHHACMVDLLGRAGQIDEANEIIKTVPLESDARVYGPLLSACKIHSETRVAELAAEKLINMEPKNAGNYVLLSNIYAAAGKWDKVAKMRSFLRDRGLKKTPGYSWLELNGQVHEFRVADQSHPRWEDIYSILKVLELEAGDMEDDLELFDPSVIKGCELHMNQLNQL 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01854 734 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 714 - -
Gma15g01854 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Gma15g01854 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Gma15g01854 734 Pfam PPR repeat family 495 542 IPR002885 -
Gma15g01854 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 91 125 IPR002885 -
Gma15g01854 734 TIGRFAM PPR: pentatricopeptide repeat domain 532 566 IPR002885 -
Gma15g01854 734 TIGRFAM PPR: pentatricopeptide repeat domain 498 530 IPR002885 -
Gma15g01854 734 TIGRFAM PPR: pentatricopeptide repeat domain 265 293 IPR002885 -
Gma15g01854 734 TIGRFAM PPR: pentatricopeptide repeat domain 293 326 IPR002885 -
Gma15g01854 734 TIGRFAM PPR: pentatricopeptide repeat domain 394 427 IPR002885 -
Gma15g01854 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Gma15g01854 734 Gene3D Tetratricopeptide repeat domain 29 154 IPR011990 GO:0005515
Gma15g01854 734 Gene3D Tetratricopeptide repeat domain 464 693 IPR011990 GO:0005515
Gma15g01854 734 Gene3D Tetratricopeptide repeat domain 192 342 IPR011990 GO:0005515
Gma15g01854 734 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 2 714 - -
Gma15g01854 734 Pfam E motif 612 674 IPR046848 -
Gma15g01854 734 Pfam PPR repeat 194 222 IPR002885 -
Gma15g01854 734 Pfam PPR repeat 293 323 IPR002885 -
Gma15g01854 734 Pfam PPR repeat 394 423 IPR002885 -
Gma15g01854 734 Pfam PPR repeat 467 488 IPR002885 -
Gma15g01854 734 Pfam PPR repeat 265 291 IPR002885 -
Gma15g01854 734 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Gma15g01854 734 Gene3D Tetratricopeptide repeat domain 343 449 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01854 Gma-Chr15 23051712 23053916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01854 30 705 Glycoside Hydrolase AT3G49170 28.654 1.65e-96 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01854 - - gmx:102669772 1460.28