Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g2635 ATGGTTGAGAAATCCATGTGCCCTGATGAAGATTGCTGTTCATCTGTTTTGAAATCTTTGTTTTATGTGTTTCATGAAAAAGGGTTGTTGATGATGGTTCATGGGCATCTTGTGAAATTGGGTATGGATGCATTTGATGTGGTGGGAAATACTTTGATTGAGTTGTATGGTTTTTTGAATGGTTCTGTAACAGGATTGAATTATTGGAATAATTTGATTTATGAGGCTTTTGAAAGTGGGAAAATTGTTGAAAGTTTTCAATTGTTTTGTAGGATGAGAAAAGAGAATGTACAACCTAATTCAGTTACTTTGATTAATTTGTTAAGAGCTAGTGTTGAATTGAACTCGTTGAAGATTGGGAAAGTTCTTCATTCTTTGGTTGTTGTGAGCAACTTGTGTAAGGAACTAACTGTGAATACTGCATTGTTGTCAATGTATGCTAAGTTGCGTAGTTTGGAAGATGCAAGGTTGATGTTTGATAAAATGCCTGAGAAGGATGTTGTAGTTTGGAACATAATGATTTCAGCGTATTGTGGGAATGGTTACCCTAAGGAATCGTTAGAACTTGTGTATTGTATGGTTAGATCAGGGATTAGACCTGACATGTTCACCGCAATCCCTGCATTTTCTTCGATTACGAAGTTTAAGTCTAACGAGTGGGGGAAGCAAATGCATGCTCAAGTGATAAGAAACGGTTCAGATTATCAGGTTTCGGTTAATAATTCTCTTGTTGACATGTATTCCACGTGTGAGGACTTACATTCAGCACGGAAGATTTTTGGTTTGATAAAGAACAAGACTGTGGTTTCGTGGAGTGCAATGATAAAAGGGTATGCAATGCATGGCAATAGTTTCGAGGCTCTTTCTCTGTTCATAGAAATGAAGTTGAGTGGTATTAAAGTTGACTTTGTAATAGTCATTAACATTTTGCCTGCTTTTGCAAAGATAGGGGCATTGCACTATGTAAGATACTTACATGGATACTCATTGAAAACCAATCTCGATTCACTCAAATCGCTTAAGACATCGCTTCTTAGTAGCTATGCAAAATGTGGTTGCCTAGAGATGGCAAGAAAGCTTTTCGATGAGGAGAAAAGCAGCTATAAAGATATAATTGCGTGGAATTCTATGATCACTGCATATTCTAACCATGGAGAGTGGTTTCAATGTTTTCAATTATACGACCAAATGAAATTATCAAATGTTAAACCAGACCAAGTAACATTTCTCGGGATGCTCACGGCGTGTGTTAATTCAGGCCTTGTCGAAAAGGGAAAGGAGATTTTCAAGGAGATGGTGGAAATTTATGGTTACCAACCTAGTAAGGAACACAATGCATGTATGGTTGATCTATTAGGACGCGCTGGAAAAATCGATGAAGCAAGCAAAATAGTAGAAACTAATCGATTAAATTCAGATGCGAGGGTTTATGGCCCCTTGTTGAGTGCATGTAAGATGCATGATTCAGAAACCGATTTCGCAGAACATGCTGCTGAGAAGCTCATAAAAATGGAACCTAGAAATGCTGGAAACTATGTGTTGCTATCCAATATATATGCTGCAGCAGGAAAATGGGACAAAGTTGCTAAAATGAGGAGTTTTCTTAGATATAGAGGACTGAAGAAAACTCCAGGTTGTAGCTGGACAGAGTTGAATGGACAAGTGCATGAGTTTCGTGTTGCAGATCAATCTCATCCAAGATCAGAAGACATATATTCAGTATTGAAAGTACTGGAGTTGGAAGCAGGAATGGAAGATGATGTTCCTGAACTCTTTTTTGAACCTTCTACTGTTTTGGCGATGTGA 1806 0.3776 MVEKSMCPDEDCCSSVLKSLFYVFHEKGLLMMVHGHLVKLGMDAFDVVGNTLIELYGFLNGSVTGLNYWNNLIYEAFESGKIVESFQLFCRMRKENVQPNSVTLINLLRASVELNSLKIGKVLHSLVVVSNLCKELTVNTALLSMYAKLRSLEDARLMFDKMPEKDVVVWNIMISAYCGNGYPKESLELVYCMVRSGIRPDMFTAIPAFSSITKFKSNEWGKQMHAQVIRNGSDYQVSVNNSLVDMYSTCEDLHSARKIFGLIKNKTVVSWSAMIKGYAMHGNSFEALSLFIEMKLSGIKVDFVIVINILPAFAKIGALHYVRYLHGYSLKTNLDSLKSLKTSLLSSYAKCGCLEMARKLFDEEKSSYKDIIAWNSMITAYSNHGEWFQCFQLYDQMKLSNVKPDQVTFLGMLTACVNSGLVEKGKEIFKEMVEIYGYQPSKEHNACMVDLLGRAGKIDEASKIVETNRLNSDARVYGPLLSACKMHDSETDFAEHAAEKLIKMEPRNAGNYVLLSNIYAAAGKWDKVAKMRSFLRYRGLKKTPGCSWTELNGQVHEFRVADQSHPRSEDIYSVLKVLELEAGMEDDVPELFFEPSTVLAM* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g2635 601 Pfam PPR repeat family 165 204 IPR002885 -
Mal4g2635 601 Pfam PPR repeat family 369 417 IPR002885 -
Mal4g2635 601 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 587 - -
Mal4g2635 601 TIGRFAM PPR: pentatricopeptide repeat domain 140 168 IPR002885 -
Mal4g2635 601 TIGRFAM PPR: pentatricopeptide repeat domain 407 434 IPR002885 -
Mal4g2635 601 TIGRFAM PPR: pentatricopeptide repeat domain 168 201 IPR002885 -
Mal4g2635 601 TIGRFAM PPR: pentatricopeptide repeat domain 373 405 IPR002885 -
Mal4g2635 601 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Mal4g2635 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Mal4g2635 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Mal4g2635 601 Gene3D Tetratricopeptide repeat domain 338 570 IPR011990 GO:0005515
Mal4g2635 601 Pfam PPR repeat 69 97 IPR002885 -
Mal4g2635 601 Pfam PPR repeat 342 363 IPR002885 -
Mal4g2635 601 Pfam PPR repeat 269 299 IPR002885 -
Mal4g2635 601 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 587 - -
Mal4g2635 601 Gene3D Tetratricopeptide repeat domain 126 214 IPR011990 GO:0005515
Mal4g2635 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 440 IPR002885 -
Mal4g2635 601 Gene3D Tetratricopeptide repeat domain 1 125 IPR011990 GO:0005515
Mal4g2635 601 Pfam E motif 489 550 IPR046848 -
Mal4g2635 601 Gene3D Tetratricopeptide repeat domain 215 323 IPR011990 GO:0005515
Mal4g2635 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 65 99 IPR002885 -
Mal4g2635 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Mal4g2635 601 SUPERFAMILY TPR-like 148 528 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g2635 Mal-Chr4 71856428 71858233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g2635 2 590 Glycoside Hydrolase AT3G49170 30.492 5.24e-90 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g2635 - - gmx:102669772 909.827