Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1877 ATGCTCTGCACTCACAATTTGTTTCATCTCCTTAACATTCGCAAAATCCCCTACATTGTTGCACCCTTCCAGACAAGGTTTTTCACCACTTCCTCTTTGTTAGATCTCTGCACCAAACCTCAACACCTTCAACAAATCCATGCCAGGTTCTTCCTCCATGGCCTCCACCAAAACTCATCCCTTAGCTCCAAACTCATGGATTGTTATACCAAGTTTGGACTCCCAGGTTTATCCCAGAAAGTCTTCTACTTCACTGAAAACCCTGATTCAGTTATATACAGTGCAATCTTAAGAAACTTGTCTCAGTTTGGTGAACATGAGAAGACCCTCTTTTTGTATAAAGAAATGGTTGAGAAATCCATGTACCCAGATGAAGAGAGTTGCTCATTTGTTTTGAGGTCTTGCTTTTCTGTGTCTCATGAACAAGGGAAGATGGTTCACGCGCAGATAGTGAAACTGGGTATGGATGCATTTGACTTGGTGAGAAACAGTTTGGTAGAGCTGTATGAAAAAAATGGTTTTCTGAATGCACATGAACCACTTGAAGGAATGTCTGTGACAGAATTGGCTTATTGGAATAACATGATTTCTCAGGCTTTTGAGAGTGGGAAAATGGAGGAATGCTTTCAGCTCTTTTCTAGGATGAGAAAAGAGAACATCCAACCTAATTCAATTACTGTGATTAACTTGTTAAGATCAACTGTTGATTTGCACTTGTTGAAGATAGGACAAGCCCTCCACTCTCTGATTATTGTGAGCAACTTGTGTGGAGAATTAACTGTGAATACTGCATTGTTATCAATGTATGTGAAGTTGGGTAGTCTAAAAGATGCAAGACTGATGTTTGAGAAAATGCCTAGGAATGACCTTGTAGTTTGGAACATAATGGTTTCAGCATATGCGGGGAATGGGTGCCCTAAGGAATCCTTAGAGCTTGTATATTGTATGGTTAGATCAGGGGTTAGACCTGACATGTTCACGGCAATCCCTGCAATTTCTTCAATAACACAGTTAAAACATACTGAGTGGGGAAAGCAAATGCATGCTCATGTGATAAGAAATGGTTCTGATTATCAGGTATCTGTTCATAATGCTCTTATTGACATGTATTCTGCATGTAACGGCTTAAATTCGGCACGGAGGATTTTTGACTTGATAACGGACAAGACTGTGGTCTCATGGAGTGCAATGATCAAAGCACATGCAGTTCATGACCAGTGTCTTGAGGCTCTATCTCTATTCATAGAAATGAAGTTATGTGGTACTAGAGTTGACTTCATTATAGTGATTAACATCTTGCCTACATTTGCAAAGATTGGAGCATTGCATTATGTAAGATACTTACATGGGTATTCACTGAAAGCAAGCCTTGATTCACTCAAATCCCTTGAGACATCACTTCTGGCTAGCTACGCGAAATGTGGATGCATAGAGATGGCAAGAAAGCTTTTTGATGAAGGCAAAAGCAGCCATAAAGATATAATTGCATGGAACTCCATGATCAGTGCTTATTCCAAACATGGAGAGTGGTTTCAATGTTTTGAGCTTTACAACCAAATGAAACTATCAAATGTTAAACCGGACCAGGTTACGTTTCTTGGGCTGCTCACGGCTTGTGTCAATTCAGGCCTTGTTGATAAAGGGAAAGAGATTTTCAAGGAGATGGTGGACCTATATGGTTACCAACCTAGTCAGGAGCACCATGCCTGTATGGTTGATCTACTAGGACGCGCTGGACAAATTGATGAAGCAAGCAAAATAATCGAAACTGTTCCCTTGAATTCAGATGCCAGAGTTTATGGTCCCTTGTTGAGTGCCTGTAAGATGCACTCAGATCCTCGTTTAGCAGAAGTTGCAGCTCAGAAGCTCATAAATATGGAGCCTAAAAATGCTGGAAACTATGTGTTACTCTCCAATATATATGCTGCAGCAGGAAAGTGGGACAAGGTTGCTAAAATGAGGAGTTTTCTCAGAGATAGAGGACTAAAGAAAACACCAGGTTGTAGCTGGCTCGAGTCAAATGGACAAGTACACGAGTTTCGTGTTGCAGATCAATCTCATCCAAGATCGGTGGATATATATTCGATATTGAAAGTAATGGAGTTGGAAGCAGGGGATCTGGAGGATGATCTTGAACTCTTTGAGCCTCATATCATTTAA 2160 0.406 MLCTHNLFHLLNIRKIPYIVAPFQTRFFTTSSLLDLCTKPQHLQQIHARFFLHGLHQNSSLSSKLMDCYTKFGLPGLSQKVFYFTENPDSVIYSAILRNLSQFGEHEKTLFLYKEMVEKSMYPDEESCSFVLRSCFSVSHEQGKMVHAQIVKLGMDAFDLVRNSLVELYEKNGFLNAHEPLEGMSVTELAYWNNMISQAFESGKMEECFQLFSRMRKENIQPNSITVINLLRSTVDLHLLKIGQALHSLIIVSNLCGELTVNTALLSMYVKLGSLKDARLMFEKMPRNDLVVWNIMVSAYAGNGCPKESLELVYCMVRSGVRPDMFTAIPAISSITQLKHTEWGKQMHAHVIRNGSDYQVSVHNALIDMYSACNGLNSARRIFDLITDKTVVSWSAMIKAHAVHDQCLEALSLFIEMKLCGTRVDFIIVINILPTFAKIGALHYVRYLHGYSLKASLDSLKSLETSLLASYAKCGCIEMARKLFDEGKSSHKDIIAWNSMISAYSKHGEWFQCFELYNQMKLSNVKPDQVTFLGLLTACVNSGLVDKGKEIFKEMVDLYGYQPSQEHHACMVDLLGRAGQIDEASKIIETVPLNSDARVYGPLLSACKMHSDPRLAEVAAQKLINMEPKNAGNYVLLSNIYAAAGKWDKVAKMRSFLRDRGLKKTPGCSWLESNGQVHEFRVADQSHPRSVDIYSILKVMELEAGDLEDDLELFEPHII* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1877 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Lja6g1877 719 Pfam PPR repeat family 492 540 IPR002885 -
Lja6g1877 719 Pfam PPR repeat family 192 232 IPR002885 -
Lja6g1877 719 Gene3D Tetratricopeptide repeat domain 555 691 IPR011990 GO:0005515
Lja6g1877 719 Gene3D Tetratricopeptide repeat domain 457 554 IPR011990 GO:0005515
Lja6g1877 719 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 169 - -
Lja6g1877 719 SUPERFAMILY TPR-like 265 653 IPR011990 GO:0005515
Lja6g1877 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Lja6g1877 719 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 251 712 - -
Lja6g1877 719 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 187 246 - -
Lja6g1877 719 Pfam E motif 610 672 IPR046848 -
Lja6g1877 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Lja6g1877 719 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 6 169 - -
Lja6g1877 719 Pfam PPR repeat 291 321 IPR002885 -
Lja6g1877 719 Pfam PPR repeat 465 488 IPR002885 -
Lja6g1877 719 Pfam PPR repeat 392 421 IPR002885 -
Lja6g1877 719 Pfam PPR repeat 91 119 IPR002885 -
Lja6g1877 719 Pfam PPR repeat 263 289 IPR002885 -
Lja6g1877 719 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 251 712 - -
Lja6g1877 719 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 187 246 - -
Lja6g1877 719 TIGRFAM PPR: pentatricopeptide repeat domain 192 223 IPR002885 -
Lja6g1877 719 TIGRFAM PPR: pentatricopeptide repeat domain 263 291 IPR002885 -
Lja6g1877 719 TIGRFAM PPR: pentatricopeptide repeat domain 91 125 IPR002885 -
Lja6g1877 719 TIGRFAM PPR: pentatricopeptide repeat domain 291 324 IPR002885 -
Lja6g1877 719 TIGRFAM PPR: pentatricopeptide repeat domain 530 564 IPR002885 -
Lja6g1877 719 TIGRFAM PPR: pentatricopeptide repeat domain 496 528 IPR002885 -
Lja6g1877 719 Gene3D Tetratricopeptide repeat domain 190 342 IPR011990 GO:0005515
Lja6g1877 719 Gene3D Tetratricopeptide repeat domain 21 173 IPR011990 GO:0005515
Lja6g1877 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1877 Lja-Chr6 46046393 46048552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1877 29 697 Glycoside Hydrolase AT3G49170 29.386 9.00e-102 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1877 - - gmx:102669772 1170.22