Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02700 ATGCCCAAGTCTATTGATCTAAGCTGTGTGTTCCTAGCCGTTACCTTATTGAGAAAGTCTAACCTTGAGGCTATAGTGAGTGTGCCTACTATAGCTTTGTGGCCACAACCTGCACTGACCTCGAGTTCCAGAGAGCCAATTGGTAATGGAGAAATTGATTATGTTTTGTTTGTGAGAATCCCCAACGTTCTACTATTCCAAACTAGGTTTTCCAGCACTTCCTCTTCTATATTAGATCTCTGCACCAAAACCCAGCACCTTCAACAACTCCATACCAGGTTCTTCCTCCATGGCCTCCACCAAAACCAATCTCTTTCCTCCAAACTCATGGATTGCTATGCCAAATTTGGACTCCTGAACTTATCGCAGAAGCTTTTTCACTACACTGAAAACCCAGATTCTGTTCTCTGCAGAGCAATCTTAAGAAATTTGTATCAGTTTGGTGAATATGACAAGACCCTTTTTTTGTACAAAGAGATGGTTGGGAAGTCCATGTACCCAGATGAAGAAAGTTGCTCTTTCGTTTTGAGATCTTGCTTTTGTTTGTCTCATGAACAAGGGAAGATGGTTCATGGGCAGATAGTGAAACTGGGTTTGGATGCATTTGGCTTGGTGGGGAGAACTTTGATTGAGTTGTATGACATGAGTGGTTTTTCTAATGTACATGTATCGGCTGAAGGAAAATATGGAATTGAATTCAATTATTGGAATAAATTGATTTCAGAGGCATCTGAAAATGGGAAAATGGTGGAAAGCTTTCGACTCTTCTATAGGATGAGAAAGGAGAATATCCAACCTAATTCAATTATTGTGATTGACTTGTTAAGGTCTACTGTTGAGTTGAACTCACAGAAGATAGGACAAGCTCTACACTCTCTTGTTGTTGTGAGCAACCTGTGTGAAGATCTATCTGTGAATACCGCACTGTTGTCAATGTATGCAAAGTTGGGTAGTCTAGAAGATGCAAGAATGCTGTTTGAGAAAATGCCTGATAAGGACCTTGTAGTCTGGAACATAATGATTTCAGCATATGCAGGGAATGGATTCCCCAAGGAATCCTTAGAACTTGTATATTGTATGGTTAGATCAGGTTTTAGGCCTGACTTATTCACGGCAATTCCTGCCATTTCTTCTATCACACAGTTAAAGCATAATGAATGGGGAAAGCAAATGCATGCTCATGTGATACGAAATGGTTCAGATTATCAGGTATCCATTCACAATTCTCTTATTGACATGTATTCTGCATGTAAGAACTTAAATATGGCACAAAATATTTTTGGCTTCATAACGGACAAGACTGTGGTTTCATGGAGTGCAATGATCAAAGGATATGCAATACATGACCAGCCCCTTGAGGCTCTCTCTCTTTTCTTGAAAATGAAGTTGAGTAGTACCAGAATTGACTTCATTATAGTCATTAACATGTTGCCATCCTTTGCAAAGATAGGGGCATTGCATTATGTAAGTTACTTACATGGTTACTCGTTGAAAACCAGCCTTGATTCACTCAAATCCCTTAAGACATCCTTTCTTAGTAGCTATGCAAAATGTGGTTGCATAGAAATGGCCAGAAAGCTTTTTGATGAAGAGAAAAGTATCCTTAGAGATATAATCGCGTGGAACTCTATGATCAGTGCGTATTCTAAACATGGAGAGTGGTTTAGATGTTTTCAATTGTACAGCCAAATGAAACTATCGAACATTGTACCGGACCAAGTAACATTTCTTGGGTTGCTCACAGCTTGTGTTAACTCAGGCCTTGTTAGTAAAGGCAGGGAGATTTTCGAGGAAATGGTGGAAATATATGGTTACCAACCTAGTCAGGAACACCATACTTGTATGGTTGATCTACTAGGACGTGCTGGCCAAATCGATGAAGCCAATAAAATAATAAAAACAATTCCATTGTTGTCAGATGCAAGGGTTTATGGCCCCTTGTTGAGTGCCTGTAAGATACACTCAGAGACCCATTTAGCAGAACTTGCTGCTAAGAAGCTTATAAATATGGAGCCCAAAAATGCTGGAAACTATGTATTGCTCTCCAATATATATGCTGCAGCAGGAAAGTGGGACAAAGTTGCTAGAATGAGGAGTTATCTTAGAGATAGAGGACTAAAGAAAACACCAGGTTGTAGTTGGCTTGAATTAAATGGACAAGTTCACGAGTTTCGAGTTGCGGATAAATCTCATCAAAGATGGGAGGATATATATTCTATATTAAAAGTACTGGAGTTGGAATCCGGGAGCATGGAAGATGATCTTGAACTCTTTGACCCTTCTGTTCTGTCACTAAGGGATCTGAGTTTCACAAGAAAAACTCAATCTACGTGA 2334 0.3955 MPKSIDLSCVFLAVTLLRKSNLEAIVSVPTIALWPQPALTSSSREPIGNGEIDYVLFVRIPNVLLFQTRFSSTSSSILDLCTKTQHLQQLHTRFFLHGLHQNQSLSSKLMDCYAKFGLLNLSQKLFHYTENPDSVLCRAILRNLYQFGEYDKTLFLYKEMVGKSMYPDEESCSFVLRSCFCLSHEQGKMVHGQIVKLGLDAFGLVGRTLIELYDMSGFSNVHVSAEGKYGIEFNYWNKLISEASENGKMVESFRLFYRMRKENIQPNSIIVIDLLRSTVELNSQKIGQALHSLVVVSNLCEDLSVNTALLSMYAKLGSLEDARMLFEKMPDKDLVVWNIMISAYAGNGFPKESLELVYCMVRSGFRPDLFTAIPAISSITQLKHNEWGKQMHAHVIRNGSDYQVSIHNSLIDMYSACKNLNMAQNIFGFITDKTVVSWSAMIKGYAIHDQPLEALSLFLKMKLSSTRIDFIIVINMLPSFAKIGALHYVSYLHGYSLKTSLDSLKSLKTSFLSSYAKCGCIEMARKLFDEEKSILRDIIAWNSMISAYSKHGEWFRCFQLYSQMKLSNIVPDQVTFLGLLTACVNSGLVSKGREIFEEMVEIYGYQPSQEHHTCMVDLLGRAGQIDEANKIIKTIPLLSDARVYGPLLSACKIHSETHLAELAAKKLINMEPKNAGNYVLLSNIYAAAGKWDKVARMRSYLRDRGLKKTPGCSWLELNGQVHEFRVADKSHQRWEDIYSILKVLELESGSMEDDLELFDPSVLSLRDLSFTRKTQST 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02700 777 Gene3D Tetratricopeptide repeat domain 378 490 IPR011990 GO:0005515
Spst9g02700 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 332 IPR002885 -
Spst9g02700 777 FunFam pentatricopeptide repeat-containing protein At1g11290, chloroplastic 506 743 - -
Spst9g02700 777 FunFam Uncharacterized protein 71 196 - -
Spst9g02700 777 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 73 217 IPR046960 GO:0003723|GO:0009451
Spst9g02700 777 Pfam PPR repeat 236 264 IPR002885 -
Spst9g02700 777 Pfam PPR repeat 509 530 IPR002885 -
Spst9g02700 777 Pfam PPR repeat 307 333 IPR002885 -
Spst9g02700 777 Pfam PPR repeat 335 365 IPR002885 -
Spst9g02700 777 Pfam PPR repeat 436 462 IPR002885 -
Spst9g02700 777 Gene3D Tetratricopeptide repeat domain 509 735 IPR011990 GO:0005515
Spst9g02700 777 Gene3D Tetratricopeptide repeat domain 69 198 IPR011990 GO:0005515
Spst9g02700 777 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 286 386 - -
Spst9g02700 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Spst9g02700 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 537 571 IPR002885 -
Spst9g02700 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Spst9g02700 777 Pfam PPR repeat family 537 584 IPR002885 -
Spst9g02700 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Spst9g02700 777 Pfam E motif 654 716 IPR046848 -
Spst9g02700 777 Gene3D Tetratricopeptide repeat domain 278 377 IPR011990 GO:0005515
Spst9g02700 777 NCBIfam pentatricopeptide repeat 335 368 IPR002885 -
Spst9g02700 777 NCBIfam pentatricopeptide repeat 307 335 IPR002885 -
Spst9g02700 777 NCBIfam pentatricopeptide repeat 540 572 IPR002885 -
Spst9g02700 777 NCBIfam pentatricopeptide repeat 436 465 IPR002885 -
Spst9g02700 777 NCBIfam pentatricopeptide repeat 236 267 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02700 Spst-Chr9 61068595 61074100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02700 71 747 Glycoside Hydrolase AT3G49170 28.058 5.81e-93 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02700 - - gmx:102669772 1196.8