Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1737 ATGCTCCACACTCACCAGCATTTGTTTCATCTCTTTAACATTTCCAAAATCCCCAACATTCTACTCTTCCAAACAAGGTTTTTCAGCACTTCCTCTTCTATATTAGATCTCTGCACCAAACCACAGCACCTTCAACAAGTCCATGCCAGGTTCTTCCTCCATGGCCTCCACCAAAACACATCTCTTTCCTCCAAACTCATGGATTGCTATGCAAAGTTTGGACTCCTAAATTTATCCCAGAAACTCTTCTACTTCACTGAAAACCCAGATTCAGTTCTCTACAGTGCAATCTTAAGAAACTTGTACCAGTTTGGTGAATATGAGAAGACCCTCTTTTTGTATAAAGAGGTGGTGGAGAAATCCATGTACCCAGATGAAGAAAGTTGCTCTTTTGTTTTGAGATCTTGCTTTTCTGTGTCTCATGAACAAGGGAAGATGGTTCATGGGCAGATAGTGAAACTGGGTATGGATGCATTTGATTTGGTGGGAAAAACTTTGATAGAGTTGTATGACATGAATGGGTTTTTGAATGTGCATGAACCAGTTGGAAGAAAGTATGCAAAGGAGTTGAATTATTGGAATAACTTGATTTTAGAGGCATCTAAAAGTGGGAAAATGGAGGAAAGCTTTCAACTCTTTTGTAGGATGAGAAAAGATAATATCCAACCTAATTCAACTAGTGTGATTAACTTGTTAAGGTCCACTGTTGACTTGAACTCATTAAAGATAGGACAATCCCTCCACACTCTGGTTGTTGTGAGCAACTTGTGTGAAGAACTAACTGTGAATACTGCACTACTGTCAATGTATACAAAGTTGGGTAGTCTACAAGATGCAAGAATGCTGTTTGAGAAAATGCCTGAAAAGGACCTTGTTGTCTGGAACATAATGATTTCAGCATATGCAGGGAATGGATGCTCCAAGGAATCGTTAGAACTTGTATATTGTATGGTTAGATCAGGTTTTAGACCTGACTTGTTCACGGCAATCCCCGCAATTTCTTCAATTACACAGTTAAAGTATAAGGAATGGGGAAAGCAAATGCATGCTCATGTAATAAGAAATGATTCAGATTATCAGGTATCCGTTCACAATTCTCTTATTGACATGTATTCTGCATGCAATGACTTGAATTTGGCAGAGAAGATTTTTGGCTTGATAATGGACAAGACTGTGGTTTCATGGAGTGCAATGATCAAAGGATACGCAATGCATGACCAGCCTCTTGAGGCTCTGTCTCTATTCTTGAAAATGAAGTTGAGTGGTACTAGAGTTGACTTCATTATAGTCATTAACATCTTGCCAGCCTTTGCAAAGATAGGGGCGTTGCATTATGTAAGTTACTTACACGGTTATTCATTGAAAACCAGCCTTGAGTCACTCAAATCCCTTAAGACATCGTTTCTTAGTAGCTATGCTAAGTGTGGTTGCATAGAAATGGCCAGAAAGCTTTTTGATGAAGAGAAAAGTATCCATAAAGATATAATTGCATGGAACTCTATGATCAGTGCGTATTCTAAACATGGTGAGTGGTTTAGATGTTTTCAGTTGTACAGCCAAATGAAACTATCAAACATTATACCGGACCAAATAACATTTCTGGGGCTGCTCACAGCTTGTGTCAACTCAGGCCTTGTTAATAAAGGCAAGGAGATTTTCAAGGAAATGGTGGAAATATATGGTTACCAACCTAGTCAGGAACACCATGCTTGTATGGTTGATCTACTAGGACGTGCTGGACAAATTGATGAAGCCAATGAAATAGTAGCAACTATTCCGTTGGAGTCAGATGCCAGGGTTTATGGCCCCTTGTTGAGTGCCTGTAAGATACACTCAGAGACCCGTTTAGCAGAACTTGCTGCTCAGAAGCTTATAAATATGGAACCTAAAAATGCTGGAAACTATGTGTTGCTCTCCAATATATACGCTGCAGCAGGAAAGTGGGACAAAGTTGCTAAAATGAGGAGTTTTCTTAGAAATAGAGGACTAAAGAAAACACCAGGTTGTAGCTGGCTTGAATTAAATGGACAAGTACACGAGTTTCGTGTTGCAGATCAATCTCATCCAAGATGGGAGGATATATATTCAATACTAAAAGTGCTGGAGTTGGAAGCAGGGGGTATGGAGGATGATCTTGAACTCTTTGACCCTCCTATCATTAAGGGATGTGAATTGCACATGAATCAACTCAACCACCTTTAA 2202 0.3946 MLHTHQHLFHLFNISKIPNILLFQTRFFSTSSSILDLCTKPQHLQQVHARFFLHGLHQNTSLSSKLMDCYAKFGLLNLSQKLFYFTENPDSVLYSAILRNLYQFGEYEKTLFLYKEVVEKSMYPDEESCSFVLRSCFSVSHEQGKMVHGQIVKLGMDAFDLVGKTLIELYDMNGFLNVHEPVGRKYAKELNYWNNLILEASKSGKMEESFQLFCRMRKDNIQPNSTSVINLLRSTVDLNSLKIGQSLHTLVVVSNLCEELTVNTALLSMYTKLGSLQDARMLFEKMPEKDLVVWNIMISAYAGNGCSKESLELVYCMVRSGFRPDLFTAIPAISSITQLKYKEWGKQMHAHVIRNDSDYQVSVHNSLIDMYSACNDLNLAEKIFGLIMDKTVVSWSAMIKGYAMHDQPLEALSLFLKMKLSGTRVDFIIVINILPAFAKIGALHYVSYLHGYSLKTSLESLKSLKTSFLSSYAKCGCIEMARKLFDEEKSIHKDIIAWNSMISAYSKHGEWFRCFQLYSQMKLSNIIPDQITFLGLLTACVNSGLVNKGKEIFKEMVEIYGYQPSQEHHACMVDLLGRAGQIDEANEIVATIPLESDARVYGPLLSACKIHSETRLAELAAQKLINMEPKNAGNYVLLSNIYAAAGKWDKVAKMRSFLRNRGLKKTPGCSWLELNGQVHEFRVADQSHPRWEDIYSILKVLELEAGGMEDDLELFDPPIIKGCELHMNQLNHL 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1737 733 Pfam PPR repeat 264 290 IPR002885 -
Ssu1g1737 733 Pfam PPR repeat 466 487 IPR002885 -
Ssu1g1737 733 Pfam PPR repeat 292 322 IPR002885 -
Ssu1g1737 733 Pfam PPR repeat 393 422 IPR002885 -
Ssu1g1737 733 Pfam PPR repeat 193 221 IPR002885 -
Ssu1g1737 733 Pfam PPR repeat 364 388 IPR002885 -
Ssu1g1737 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Ssu1g1737 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Ssu1g1737 733 TIGRFAM PPR: pentatricopeptide repeat domain 199 224 IPR002885 -
Ssu1g1737 733 TIGRFAM PPR: pentatricopeptide repeat domain 292 325 IPR002885 -
Ssu1g1737 733 TIGRFAM PPR: pentatricopeptide repeat domain 393 426 IPR002885 -
Ssu1g1737 733 TIGRFAM PPR: pentatricopeptide repeat domain 497 529 IPR002885 -
Ssu1g1737 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Ssu1g1737 733 Pfam PPR repeat family 493 541 IPR002885 -
Ssu1g1737 733 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 713 - -
Ssu1g1737 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Ssu1g1737 733 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 713 - -
Ssu1g1737 733 Pfam E motif 611 673 IPR046848 -
Ssu1g1737 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 124 IPR002885 -
Ssu1g1737 733 Gene3D Tetratricopeptide repeat domain 351 450 IPR011990 GO:0005515
Ssu1g1737 733 Gene3D Tetratricopeptide repeat domain 28 161 IPR011990 GO:0005515
Ssu1g1737 733 Gene3D Tetratricopeptide repeat domain 191 350 IPR011990 GO:0005515
Ssu1g1737 733 Gene3D Tetratricopeptide repeat domain 465 692 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1737 Ssu-Chr1 43024406 43026607 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1737 30 714 Glycoside Hydrolase AT3G49170 27.778 1.29e-95 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1737 - - gmx:102669772 1297.34