Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1092 ATGCTCCCCACTCACCACCACCATTTGTTTCACCTATGTAACAACGTTTCCAAAATCTCCAACATTCTTCCACCACTCTTCAAAGCAAGCTTTTCCACCACTTCCTCTTCTGTATTGAATCTCTGCACCAAACCACAACACCTTCAACAACTCCATGCAAGGTTCTTCATCCATGGCCTCCACCAAAACTCGTCCCTTTCCTCCAAACTCATTGATTCCTATGCCAAGTTTGGACTCCTCAACACGTCCCATAAACTCTTCCACTTCACTGAAAACAAAGACTTGGTTTTTTATGGTGCAGTCTTAAGAAACTTGCACCAGTTTGGTGAATATGAGAAGACACTCTTGGTTTACAAAGAGATGGTTGAGAAATCTGTGTACCCAGATGAAGAAAGTTGCTACTTTGCTTTGAGATCTTGCTTTTGTGTTTCTTGTGAACATGGGAAGATGGTTCATGGGCAGATACTGAAACTGGGGTTGGATGCATTTGACTTGGTGGGGAAAAGTTTGATGGAGTTGTATGAGATGAATGGTTTGTTGAATGTGATTGAGATTTTCGGCTTGATTGTGGACAAGACCGTGGTTTCATGGAGTGCAATGATCAGAGGATGTGCAATGCATGACCAGCCTCTTGAGGCTCTGTCTCTGTTCTTGAAAATGAAGTTGAGTGGTACTAGTAGTGTCGACTTCATTATAGTCATCAACATCTTGCCAGCCTTTGCAAAGATAGGGGCATTGCATTATGTATGTTACTTACATGGTTACTCGCTGAAAACCAGCCTTGATTCGCTCAAATCCCTCAAGTCATCGTTTCTCACCAGCTATGCTAAGTGTGGCTGCATAGAAATGGCCAGAAAGCTTTTTGATGAAGAGAAAAGCCGTGCTGGCCGAATCGATGAGGCCAATGAGATGCTAAAAACCATTCCGGTGGAGTCGGATGCCAGGGTTTATGGCCCCTTGTTGAGTGCCTGCAAGATGCACTCTTCGGAGACCGGATTAGCAGAAGTTGCTGCTGAGAAGCTCATGAATATGGAACCTAAAAATGCTGGAAACTATGTGCTGCTCTCTAATATATATGCTGCAGCAGGGAAGTGGGACAAGGTTGCTAAAATGAGGAGTTTTCTTAGAGATAGAGGACTAAAGAAAACACCAGGTTGTAGCTGGCTTGAGTTGAATGGACAAGTTCATGAGTTTCGTGTTGCAGATCAATGCCATCCAAGATGGGAGGATATTTACTCAATACTAAAAGTGCTGGAGTTTGAAGCAGGGGATATGGAAGATGATGTTGAACTCTTTGACCCTCCTGTCATTGAGTTAACTAGCAAGTTTGATAACCATAGATGTGTGACAATTGTGGCTATGGAGCATTATGAGCCACCAGTACTAGCTTGTGCTCTTAATGAGGTCCTTAATAAAATTACTGCAGATAAATCATCCTCGATGCCTACAATTTTGGTACCGTTTTTGGTGGAATCATCCAAGGTTAAAGGGCAATGTAAATCCCTAAGATCAGATGAAAGCAAACCTATATTGGGTATACAGATACTTCATGCAATAGGTGAGATTTTGGCTAGCACTACAGGTCTGCAGTTTTCAGAAGACAAAGTGGTATGGAATCCAAAAAAGGCATCAGGGGAAAGCAAGGAGCCATGGCGTGCATTATATGGTTGA 1671 0.4285 MLPTHHHHLFHLCNNVSKISNILPPLFKASFSTTSSSVLNLCTKPQHLQQLHARFFIHGLHQNSSLSSKLIDSYAKFGLLNTSHKLFHFTENKDLVFYGAVLRNLHQFGEYEKTLLVYKEMVEKSVYPDEESCYFALRSCFCVSCEHGKMVHGQILKLGLDAFDLVGKSLMELYEMNGLLNVIEIFGLIVDKTVVSWSAMIRGCAMHDQPLEALSLFLKMKLSGTSSVDFIIVINILPAFAKIGALHYVCYLHGYSLKTSLDSLKSLKSSFLTSYAKCGCIEMARKLFDEEKSRAGRIDEANEMLKTIPVESDARVYGPLLSACKMHSSETGLAEVAAEKLMNMEPKNAGNYVLLSNIYAAAGKWDKVAKMRSFLRDRGLKKTPGCSWLELNGQVHEFRVADQCHPRWEDIYSILKVLEFEAGDMEDDVELFDPPVIELTSKFDNHRCVTIVAMEHYEPPVLACALNEVLNKITADKSSSMPTILVPFLVESSKVKGQCKSLRSDESKPILGIQILHAIGEILASTTGLQFSEDKVVWNPKKASGESKEPWRALYG 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1092 556 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 169 292 - -
Aed4g1092 556 Gene3D Tetratricopeptide repeat domain 160 406 IPR011990 GO:0005515
Aed4g1092 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 94 128 IPR002885 -
Aed4g1092 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Aed4g1092 556 Pfam PPR repeat 195 224 IPR002885 -
Aed4g1092 556 Pfam PPR repeat 270 290 IPR002885 -
Aed4g1092 556 Pfam E motif 329 390 IPR046848 -
Aed4g1092 556 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 169 292 - -
Aed4g1092 556 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 294 430 - -
Aed4g1092 556 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 171 - -
Aed4g1092 556 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 294 430 - -
Aed4g1092 556 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 2 171 - -
Aed4g1092 556 TIGRFAM PPR: pentatricopeptide repeat domain 195 224 IPR002885 -
Aed4g1092 556 Gene3D Tetratricopeptide repeat domain 30 158 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1092 Aed-Chr4 10231688 10235720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1092 30 418 Glycoside Hydrolase AT3G49170 27.020 1.53e-42 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1092 - - gmx:102669772 305.449