Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01188 ATGTTCTACTTTAACATCACCAAAATCCCCAACATCAAACCTTTTCAAACAAGATTCTTCACCACAACCTCTTCTATACTAAACCTCTGCACCAAACCACAACACCTTCAACAAATCCATGCCAGATTCTTCCTCCACGGTCTCCACCAAAACTCTTCCCTTTCCTCCAAACTCATCGATTCTTATTCCAACTTCGGACTCCTTCATTTCTCTCACAAACTCTTCCACTACACCGAAAACCCAGATTCACTTCTCTACAATGCTTACCTTAGAAGCTTGTTTAGGTTTGGTGAATATGAAAAGACTCTTTTTTTGTATAAAGAAATGGTTGAGAAATCAATGTGCCCAGATGAGGATTCTTGTTTTTCTGTTTTGAAATGTTGGAATGGTTTGATTTATGAGGCTTATGAAAGTGGGAAATTTGTGGAAAGTTTTCAATTTTTTTGTAGGATGAGAAAAGAGAATGTGCAACCCAATTCAGTTACTGTGATTAACTTGTTAAGGGTTAGTATTGAATTGAACTCGTTGAAGATGGGGAAAGTTCTTCATTCTTTGGTTGTTGTGAGTGATTTGTGTAAGGATTTAACAGTGAATACTGCGGTGTTGTCGATGTATGTTAAGTTGGGTGATTTAGAAGATGCAAGAATGGTGTTTGAGAAAATGCCTGAGAAGGATGTTGTAGTTTGGAACATTATGATTTCGGCGTATTCTGGGAAAGGTTACTCTAAGGAATCGTTAGAACTTTTGTATTGTATGGTTAGATCGGGGGTTAGACCCGACTTGTTCACAGCGATCCCCGCGATTTCTTCGATCACGAAGCTAAAGTTTAACGAGTGGGGGAAGCAAATGCATGCTCAAGTGATGAGAAATGGTTCAGATTATCAGGTTTCTGTTCATAATTCTCTTATTGACATGTATTCAATGTGTGACAACATAAATTCGGCGCAGAAGATTTTCGGATTGATAGTGGACAAGACTGTGGTTTCGTGGAGTGCGATGATCAAAGGGTATGCAATGCATGGTCGGTGTTTCGAGGCGCTTTCTCTGTTCGTAGAAATGAAGTTATGTGGTACTAAAGTTGACTTTGTAATAGTAATCAACATTTTGCCTGCTTTTGCAAAGATAGGGGCATTGCATTATGTAAGATACTTACATGGTTACTCGTTGAAAACCAATCTGGATTCGCTCAAATCGCTTAAGACGTCGCTTCTTAGTAGCTATGCCAAATGTGGTTGCATAGAGATGGCTAGAAAGCTTTTTGATGAAGAGAAAAACAGCCATAAAGATATAATTGCATGGAACTCTATGATCACTGCATATTCCAACCATGGAGAGTGGTTTCAATGTTTTCAGTTATACGACCAAATGAAGCTATCAAATGTTAAACCAGATCAAGTATCGTTTCTCGGGATTCTCACGGCTTGTGTTAATTCAGGCCTTGTGGAAAAGGGCAAGGAGATTTTCAAGGAGATGGTGGAAATTTACGGTCACCAACCTAGTAAGGAACATAACGCTTGTATGGTGGATTTGTTAGGACGCGCTGGAAAAATCGATGAAGCAAGCGAAATAATAGAAAACAGTCGATTAAATTCAGATGCAAAGGTTTACGGACCCTTGCTAAGTGCATGTAAGATGCACGATTCAGAAAGCGATTTCGCCGAACTTGCTGCTGAGAAACTCATAAATATGGAACCGAAAAATGCTGGAAACTACGTGCTGCTATCGAATATATATGCTGCAGCAGGAAAATGGGAGAAAGTTGCTAAAATGCGGAGTTTTCTTAGAGATAGAGGACTAAAGAAAATACCAGGGTGTAGCTGGGTAGAGTTGAATGGACTAGTGCATGAGTTTCGTGTTGCGGATCAAAATCATTCAAGAGCAGAAGATATATATTCAGTATTGAAAGTTTTGGAGTTTGAAGCGGGCATGGAGAATGATGATGATCTCGAACTCGGTTTTGGAGTTTGA 1968 0.3938 MFYFNITKIPNIKPFQTRFFTTTSSILNLCTKPQHLQQIHARFFLHGLHQNSSLSSKLIDSYSNFGLLHFSHKLFHYTENPDSLLYNAYLRSLFRFGEYEKTLFLYKEMVEKSMCPDEDSCFSVLKCWNGLIYEAYESGKFVESFQFFCRMRKENVQPNSVTVINLLRVSIELNSLKMGKVLHSLVVVSDLCKDLTVNTAVLSMYVKLGDLEDARMVFEKMPEKDVVVWNIMISAYSGKGYSKESLELLYCMVRSGVRPDLFTAIPAISSITKLKFNEWGKQMHAQVMRNGSDYQVSVHNSLIDMYSMCDNINSAQKIFGLIVDKTVVSWSAMIKGYAMHGRCFEALSLFVEMKLCGTKVDFVIVINILPAFAKIGALHYVRYLHGYSLKTNLDSLKSLKTSLLSSYAKCGCIEMARKLFDEEKNSHKDIIAWNSMITAYSNHGEWFQCFQLYDQMKLSNVKPDQVSFLGILTACVNSGLVEKGKEIFKEMVEIYGHQPSKEHNACMVDLLGRAGKIDEASEIIENSRLNSDAKVYGPLLSACKMHDSESDFAELAAEKLINMEPKNAGNYVLLSNIYAAAGKWEKVAKMRSFLRDRGLKKIPGCSWVELNGLVHEFRVADQNHSRAEDIYSVLKVLEFEAGMENDDDLELGFGV 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01188 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 116 IPR002885 -
Vivi4g01188 655 FunFam Pentatricopeptide repeat-containing protein chloroplastic 278 379 - -
Vivi4g01188 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Vivi4g01188 655 FunFam pentatricopeptide repeat-containing protein At1g11290, chloroplastic 398 636 - -
Vivi4g01188 655 Pfam PPR repeat family 224 263 IPR002885 -
Vivi4g01188 655 Pfam PPR repeat family 428 476 IPR002885 -
Vivi4g01188 655 Gene3D Tetratricopeptide repeat domain 397 628 IPR011990 GO:0005515
Vivi4g01188 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Vivi4g01188 655 NCBIfam pentatricopeptide repeat 199 227 IPR002885 -
Vivi4g01188 655 NCBIfam pentatricopeptide repeat 86 118 IPR002885 -
Vivi4g01188 655 NCBIfam pentatricopeptide repeat 227 260 IPR002885 -
Vivi4g01188 655 NCBIfam pentatricopeptide repeat 432 464 IPR002885 -
Vivi4g01188 655 NCBIfam pentatricopeptide repeat 328 361 IPR002885 -
Vivi4g01188 655 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 127 642 IPR046960 GO:0003723|GO:0009451
Vivi4g01188 655 Gene3D Tetratricopeptide repeat domain 20 175 IPR011990 GO:0005515
Vivi4g01188 655 Gene3D Tetratricopeptide repeat domain 281 383 IPR011990 GO:0005515
Vivi4g01188 655 Gene3D Tetratricopeptide repeat domain 176 280 IPR011990 GO:0005515
Vivi4g01188 655 Pfam PPR repeat 127 156 IPR002885 -
Vivi4g01188 655 Pfam PPR repeat 401 422 IPR002885 -
Vivi4g01188 655 Pfam PPR repeat 299 324 IPR002885 -
Vivi4g01188 655 Pfam PPR repeat 328 357 IPR002885 -
Vivi4g01188 655 Pfam PPR repeat 86 112 IPR002885 -
Vivi4g01188 655 Pfam E motif 548 609 IPR046848 -
Vivi4g01188 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 224 IPR002885 -
Vivi4g01188 655 SUPERFAMILY TPR-like 204 587 IPR011990 GO:0005515
Vivi4g01188 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01188 Vivi-Chr4 37840030 37842619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01188 128 651 Glycoside Hydrolase AT3G49170 32.519 1.80e-86 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01188 - - vvo:131599068 1296.95