Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1714 ATGCCTGACATGCTATACACACATTTGGTTCATCTCCTTAACATTCGCAAAATCCCCAACATTCTTCTATCCTTCCAAACAAGGCTTTTCAGCACTTCCTCTTCCATACTAAGTCTCTGCACCAAACCACAGCACCTTCAACAAATCCATGCCAGGTTCGTCCTCCATGGCCTCCACCAAAACTCATCTCTTTCCTCAAAACTCATGGACTGCTATGCCAGGTTTGGCCTCCCATGTTTGTCCCAGAAAATCTTCTACTTCACTGAAAACCCAGATTCAGTTCTTTACAGTGCAATCCTGAGAAACTTGTCTCAGTTTGGTGAGCATGAAAAGACCCTCTTTTTCTACAAGGACATGGTTGAGAAATCAATAAACCCAGGTGAAGATAGTTGCTCCTTTGTGTTGAGAACTTGTTTCTCTCTGTCTCATGAACAAGGGAGGATGGTTCATGGGCAGATAGTGAAACTCGGTTTGGATTCATTTGACTTGGTGGGCAACACTTTGATTGAGTTGTATGGTGATATTGGTGATTTTTTGATTGGGAATGAACCAGTTGATAGAAAGTGTGCATTTGAATTGAACTATTGGAATAAATTGATTTTTGAGGCTTGTGAAAGTGGGAAATTGGAGGAAAGCTTTCAACTCTTTTGCAGGATGAGAAGAGAGAATATTCAGCCTAGTTCAGTTACTGTGATTAAGTTGTTAAGAGCAGCTGTTGATTTGAACTCATCGAAGATAGGGCAAGCCCTCCATTCTTTGGTTGTTGTAAGCAATTTGGGTGGAGAACTGTCTGTGAATACTGCACTACTGTCAATGTATGCAAAGTTGGGTAGTCTAGAAGTTGCGAAGTTGCTATTTGATAAAATGCCTGAGAAGGACCTTGTAGTCTGGAACATAATGATTTCAGCATATGCAGGAAATGGGTGCCCTAAGGAATCCTTAGAACTTCTATATTGTATGGTTAGATCAGGAGTTAGACCTGACTTGTTTACAGCAATCCCTGCGATTTCTTCAATCACGCAATTGAAAACTATCGAGTGGGGAAAGCAAATGCATGCTCATGTGATAAGAAATGGTTCAGATTATCAGGTATCAATTCATAATTCTCTCATTGACATGTATTCCGCGTGCGACGACTTGAATTCATCCCGGAAGATTTTTGACTTGGTAATGGACAAGACTCTGGTTTCATGGAGTGCAATGATCAAAGGATATGCCATGCACGATCAATGTCTTGAGGCTCTGTCTCTGTTCTTAAAAATGAAGTTGAGTGGAACTAGAGTGGACTTCATTATAGTCATTAACATCTTGCCTGCCTTTGCAAAGATAGGGGCATTACATTATGTTAGATACTTACATGGTTACTCATTGAAAGCCGGCCTTGATTCACTCAGATCCGTTAAGACGTCGCTTCTTAGCAGCTATGCAAAATGCGGATGCATAGAGATTGCCAGAAAGCTTTTTGATGAAGAGAAAAACAGCCACAAGGATTTAATTGCATGGAACTCTATGATCAACGCATATTCTAAACATGGCGAGTGGTTTCGATGTTTTCAGTTGTACGACCAAATGAAACTATCAAATATTATTCCAGACAAGGTAACATTTCTTGGCCTGCTCACGGCTTGTGTGAACTCAGGCCTTGTTAATGAAGGCAAAGAGATTTTCAAGCAAATGGTGGAAATATATGGCTACCAACCCAGCCAGGAACACCATGCCTGTATGGTTGATCTCCTGGGACGCGCCGGACAAATCGATGAAGCCAGCGAAATAATAGAAACAATTCCTTTTAAGCCAGATGCCAGGGTTTATGGCCCCCTTCTGAGTGCCTGTAAGTTGCACTCAGAGACCCGTTTTGCAGAAATTGCTGCTCGGAAGCTTATAAATATGGAACCTGGAAATGCTGGAAATTATGTGTTGATCTCCAATATATATGCTGCAGCAGGAAAATGGGAAAAAGTTGCTAGAATGAGGAGTTTTCTTAGAGAAAGAGGACTAAAGAAAATGCCTGGTTGTAGCTGGCTAGAATTAAATGGACAAGTACATGAGTTTCGTGTTGCAGATCAGTCTCATCCAAGATCAAAAGATATATATTCAATATTAAAAATACTGGAGTTGGAAGCAGGGGATCTGGAGCATGATCTTGAACTCTTAGACCTTCCTACCATTTAA 2172 0.4098 MPDMLYTHLVHLLNIRKIPNILLSFQTRLFSTSSSILSLCTKPQHLQQIHARFVLHGLHQNSSLSSKLMDCYARFGLPCLSQKIFYFTENPDSVLYSAILRNLSQFGEHEKTLFFYKDMVEKSINPGEDSCSFVLRTCFSLSHEQGRMVHGQIVKLGLDSFDLVGNTLIELYGDIGDFLIGNEPVDRKCAFELNYWNKLIFEACESGKLEESFQLFCRMRRENIQPSSVTVIKLLRAAVDLNSSKIGQALHSLVVVSNLGGELSVNTALLSMYAKLGSLEVAKLLFDKMPEKDLVVWNIMISAYAGNGCPKESLELLYCMVRSGVRPDLFTAIPAISSITQLKTIEWGKQMHAHVIRNGSDYQVSIHNSLIDMYSACDDLNSSRKIFDLVMDKTLVSWSAMIKGYAMHDQCLEALSLFLKMKLSGTRVDFIIVINILPAFAKIGALHYVRYLHGYSLKAGLDSLRSVKTSLLSSYAKCGCIEIARKLFDEEKNSHKDLIAWNSMINAYSKHGEWFRCFQLYDQMKLSNIIPDKVTFLGLLTACVNSGLVNEGKEIFKQMVEIYGYQPSQEHHACMVDLLGRAGQIDEASEIIETIPFKPDARVYGPLLSACKLHSETRFAEIAARKLINMEPGNAGNYVLISNIYAAAGKWEKVARMRSFLRERGLKKMPGCSWLELNGQVHEFRVADQSHPRSKDIYSILKILELEAGDLEHDLELLDLPTI* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1714 723 Pfam PPR repeat 267 293 IPR002885 -
Dod03g1714 723 Pfam PPR repeat 469 490 IPR002885 -
Dod03g1714 723 Pfam PPR repeat 295 325 IPR002885 -
Dod03g1714 723 Pfam PPR repeat 396 425 IPR002885 -
Dod03g1714 723 Pfam PPR repeat 196 224 IPR002885 -
Dod03g1714 723 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 7 715 - -
Dod03g1714 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Dod03g1714 723 Gene3D Tetratricopeptide repeat domain 467 697 IPR011990 GO:0005515
Dod03g1714 723 Gene3D Tetratricopeptide repeat domain 28 156 IPR011990 GO:0005515
Dod03g1714 723 Gene3D Tetratricopeptide repeat domain 337 466 IPR011990 GO:0005515
Dod03g1714 723 Pfam PPR repeat family 496 544 IPR002885 -
Dod03g1714 723 Pfam E motif 614 676 IPR046848 -
Dod03g1714 723 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 7 715 - -
Dod03g1714 723 Gene3D Tetratricopeptide repeat domain 183 255 IPR011990 GO:0005515
Dod03g1714 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Dod03g1714 723 TIGRFAM PPR: pentatricopeptide repeat domain 196 227 IPR002885 -
Dod03g1714 723 TIGRFAM PPR: pentatricopeptide repeat domain 295 328 IPR002885 -
Dod03g1714 723 TIGRFAM PPR: pentatricopeptide repeat domain 396 429 IPR002885 -
Dod03g1714 723 TIGRFAM PPR: pentatricopeptide repeat domain 500 532 IPR002885 -
Dod03g1714 723 Gene3D Tetratricopeptide repeat domain 262 336 IPR011990 GO:0005515
Dod03g1714 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Dod03g1714 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Dod03g1714 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 126 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1714 Dod-Chr3 24676813 24679284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1714 32 707 Glycoside Hydrolase AT3G49170 29.522 1.94e-101 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1714 - - gmx:102669772 1136.32