Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1875 ATGGCAAACGAGCAGATGAAGCCAGTTGCTACACTTCTTTTGGGGCTCAACTTCTGCATGTATGTCATAGTTTTGGGCATTGGTGCATGGGCCATGAACAGAGCAATAGATTATGGTTTTATTATAGGTCAAGGATTGGAACTTCCTGCTCATTTTTCACCCATACACTTCCCTATGGGAAATGCTGCCACTGGATTCTTTGTCACATTTGCTTTGATTGCTGGAGTTGTAGGGGCTGGATCACTGATTTCAGGGCTTAATCATATCCGTTCATGGACTTCAGAGAGCTTGCCGTCTGCAGCTTCAGTTGCTGTCATTGCATGGTCTCTTACACTTCTTGCCATGGGATTTGCATGCAAAGAGATTGAACTTAACGTCAGAAATGCCCGCCTGAAAACAATGGAGGCTTTTCTGATTATCCTCTCAGCCACACAGCTTTTCTACATAGCTGTTATTCATGCTGCTGCTGCATCACCAAGGAGATAA 486 0.4444 MANEQMKPVATLLLGLNFCMYVIVLGIGAWAMNRAIDYGFIIGQGLELPAHFSPIHFPMGNAATGFFVTFALIAGVVGAGSLISGLNHIRSWTSESLPSAASVAVIAWSLTLLAMGFACKEIELNVRNARLKTMEAFLIILSATQLFYIAVIHAAAASPRR* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1875 161 PANTHER AWPM-19-LIKE FAMILY PROTEIN 1 158 IPR008390 -
Lja6g1875 161 Pfam AWPM-19-like family 16 155 IPR008390 -
Lja6g1875 161 PANTHER ABA INDUCED PLASMA MEMBRANE PROTEIN 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1875 Lja-Chr6 46036756 46038011 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1875 1 153 Miscellaneous Gene Families AT5G46530 75.163 1.17e-83 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1875 - - gmx:100527291 283.108