Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g02550 | ATGCTCCTCTCTCACCACCATTTGTTACATATTCCCAGAATCTTCCAAACAAGGTTTTCTAGCACTTCCTCTTCTATGATAGATCTCTGCACCAAACCCCAGCACCTTCAACAACTCCATGCCAGGTTCTTCCTCCATGGCCTCCACCAAAGCCAATCTCTTTCCTCCAAACTCATGGATTGCTACGCCAAATTTGGACTTCTGGACTTTTCGCAGAAGCTTTTTTACTACACTCAAAACCCAGATACCGTTCTCTACAGAGCAATCTTAAGAAACTTGTACCAGTTTGGTGAATATGACAATACCCTCTTTTTGTACAAAGCGATGGTTGGGAAGTCCATCTACCCAGATGAAGAAAGTTGCTCCTTTGTTTTGAGATCTTGCTTTTGTTTGTCTCATGAAAAAGGGAAGATGGTTCATGGGCAGATAGTGAGGCTGGGTTTGGATGCATTTGACTTGGTGGGAAGAACTTTGGTAGAGTTGTATGACATGAATGGTTTTTTTAATGTGGATGAACCAGCTGAAGGAAAATATGTAATGGAATTGAATTATTGGAATAACTTGATTTCAGAGGCATCTGAAAATGGAAAAATGGAGGAAAGCTTTAAACTCTTTTGTAGGATGAGAAAGGAGAATATCCAACCTAATTCAATTACTGTGATTGGATTGTTAAGGTCCACTGTTGAGTTGAACTCACTGAAGACAGGACAGGCCTTACACTCTTTTGTTATTGTGAGCTGCCTGTGTGGAGAACTAACTGTGAATACTGCACTGTTGTCAATGTATGCAAAGTTGGGTAGTCTAAAAGATGCAAGAATGCTGTTTGAGAAAATGCCTGACAAGGACCTTGTAGTCTGGAACATAATGATTTCAGCATATTCAGGGAATGGATTCCCCAAGGAATCCTTAGAACTTGTATATTGTATGGTTAGATCAGGTTTTAGACCTGACTTTTTCACGGCAATTCCTGCTATTGCTTCTATCACACAGTTAAAGTATAATGAATGGGGAAAGCAAATGCATGCTCATGTGATAAGAAATGGTTCAAATTATCAGGTATCCATTCACAATTCTCTTATTGACATGTATTCCGCTTGTGATGACTTAAATTTGGCACAGAAGATTTTTGCCTTCATTATGAACAAGACTGTGGTTTCATGGAGTGCAATGATCAAAGGATATACAATGCATGATCAGCCTCTTGAGGCTCTATCTCTTTTGTTGAAAATGAAGCTGAGTGGTACTAGACTCGACTTCATTGTAGTCATTAACATCTTGCCAGCCTTTGCAAAGATAGGGGCATTGCATTATGTGAGTTACTTACACGGTTACTCGTTGAAAACCAGCCTTGATTCCCTCAAATCCCTTAAGACATCCTTTCTTAGTAGCTATGCAAAATGTGGTTGCATAGAAATGGCCAGAAAGCTTTTTGATGAAGAGAAAAGTATCCATAGAGATATAATTGCGTGGAACTCAATGATCAGTGCGTATTCTAAACATGGGGAGTGGTTTAGATGTTTTCATTTGTACAGCCAAATGAAACTATCGAACATTGTACCGGACCAAGTAACATTTCTTGGGCTGCTCACAGCTTGTGTTAATTCAGGCCTTGTTAGCAAAGGCAAGGAGATTTTCAAGGAAATGGTGGAAATATATGGTTACCAACCTTGTCAGGAGCATCATACTTGTATGGTTGATCTACTTGGACGTGCTGGCCAAATCCATGAAGCCAATGAAATAATAAAAACTATTCCATTGGAGTCAGATGCCAGGGTTTATGGCCCCTTGTTGAGTGCCTGTAAGATGCACTCAGAGACTCGTTTAGCAGAACTTGCTGCTCAAAAGCTTATAAATATGGAACCTAAAAATGCTGGAAACTATGTATTGCTCTCCAATATATATGCTGCAGCAGGAAAGTGGGACAAAGTTGCTAGAATGAGGAGTTTTCTTAGAGATAGAGGACTAAAGAAAACACCAGGTTGTAGCTGGCTTGAATTAAATGGACAAGTGCACGAGTTTCGTGTAGCGGATAAATCTCATCAAAGATGGGAGGATATATACTCAATATTAAATGTACTGGAGTTGGAAGCAGGGGATATGGAAGATGATCTTGAACTCTTTGACCCTTCTGTCATTAAGGGGTGTGAATTGCACATGAATCAACCCAACCTAAGTTATAAAACCTTATAA | 2190 | 0.3968 | MLLSHHHLLHIPRIFQTRFSSTSSSMIDLCTKPQHLQQLHARFFLHGLHQSQSLSSKLMDCYAKFGLLDFSQKLFYYTQNPDTVLYRAILRNLYQFGEYDNTLFLYKAMVGKSIYPDEESCSFVLRSCFCLSHEKGKMVHGQIVRLGLDAFDLVGRTLVELYDMNGFFNVDEPAEGKYVMELNYWNNLISEASENGKMEESFKLFCRMRKENIQPNSITVIGLLRSTVELNSLKTGQALHSFVIVSCLCGELTVNTALLSMYAKLGSLKDARMLFEKMPDKDLVVWNIMISAYSGNGFPKESLELVYCMVRSGFRPDFFTAIPAIASITQLKYNEWGKQMHAHVIRNGSNYQVSIHNSLIDMYSACDDLNLAQKIFAFIMNKTVVSWSAMIKGYTMHDQPLEALSLLLKMKLSGTRLDFIVVINILPAFAKIGALHYVSYLHGYSLKTSLDSLKSLKTSFLSSYAKCGCIEMARKLFDEEKSIHRDIIAWNSMISAYSKHGEWFRCFHLYSQMKLSNIVPDQVTFLGLLTACVNSGLVSKGKEIFKEMVEIYGYQPCQEHHTCMVDLLGRAGQIHEANEIIKTIPLESDARVYGPLLSACKMHSETRLAELAAQKLINMEPKNAGNYVLLSNIYAAAGKWDKVARMRSFLRDRGLKKTPGCSWLELNGQVHEFRVADKSHQRWEDIYSILNVLELEAGDMEDDLELFDPSVIKGCELHMNQPNLSYKTL | 729 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g02550 | 729 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 181 | 215 | IPR002885 | - | |
| Phco7g02550 | 729 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 282 | 316 | IPR002885 | - | |
| Phco7g02550 | 729 | Gene3D | Tetratricopeptide repeat domain | 248 | 337 | IPR011990 | GO:0005515 | |
| Phco7g02550 | 729 | Gene3D | Tetratricopeptide repeat domain | 338 | 440 | IPR011990 | GO:0005515 | |
| Phco7g02550 | 729 | Gene3D | Tetratricopeptide repeat domain | 172 | 247 | IPR011990 | GO:0005515 | |
| Phco7g02550 | 729 | Pfam | E motif | 603 | 665 | IPR046848 | - | |
| Phco7g02550 | 729 | FunFam | Uncharacterized protein | 333 | 440 | - | - | |
| Phco7g02550 | 729 | FunFam | pentatricopeptide repeat-containing protein At1g11290, chloroplastic | 455 | 692 | - | - | |
| Phco7g02550 | 729 | NCBIfam | pentatricopeptide repeat | 489 | 521 | IPR002885 | - | |
| Phco7g02550 | 729 | NCBIfam | pentatricopeptide repeat | 256 | 284 | IPR002885 | - | |
| Phco7g02550 | 729 | NCBIfam | pentatricopeptide repeat | 284 | 317 | IPR002885 | - | |
| Phco7g02550 | 729 | NCBIfam | pentatricopeptide repeat | 385 | 418 | IPR002885 | - | |
| Phco7g02550 | 729 | NCBIfam | pentatricopeptide repeat | 185 | 216 | IPR002885 | - | |
| Phco7g02550 | 729 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 22 | 163 | IPR046960 | GO:0003723|GO:0009451 | |
| Phco7g02550 | 729 | Pfam | PPR repeat family | 486 | 533 | IPR002885 | - | |
| Phco7g02550 | 729 | Pfam | PPR repeat family | 185 | 225 | IPR002885 | - | |
| Phco7g02550 | 729 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 486 | 520 | IPR002885 | - | |
| Phco7g02550 | 729 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 383 | 417 | IPR002885 | - | |
| Phco7g02550 | 729 | FunFam | Uncharacterized protein | 20 | 145 | - | - | |
| Phco7g02550 | 729 | Pfam | PPR repeat | 284 | 314 | IPR002885 | - | |
| Phco7g02550 | 729 | Pfam | PPR repeat | 256 | 282 | IPR002885 | - | |
| Phco7g02550 | 729 | Pfam | PPR repeat | 385 | 414 | IPR002885 | - | |
| Phco7g02550 | 729 | Pfam | PPR repeat | 458 | 479 | IPR002885 | - | |
| Phco7g02550 | 729 | Gene3D | Tetratricopeptide repeat domain | 454 | 692 | IPR011990 | GO:0005515 | |
| Phco7g02550 | 729 | Gene3D | Tetratricopeptide repeat domain | 17 | 149 | IPR011990 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g02550 | Phco-Chr7 | 44324856 | 44327045 | Transposed |