Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2214 ATGTTCCACTCTCACCACCGTTTGTTACATATTCCCATAATCTTCCAAACAAGGTTTTCAAGCACTTCCTCTTCTATGTTAGATCTCTGCACCAAACCCCAACACCTTCAACAACTCCATGCAAGGTTCTTCCTCCATGGCCTCCACCAAAACCAATCTCTTTCTTCCAAACTCATGGATTGCTACGCCAAATTTGGATTCCTGGACTTATCGCATAAGCTTTTTTCTACACTCAAAACCCAGATACCTTGCTCCTTTGTTTTGAGATCTTGCTTTTGTTTGTCTCATGAACAAGGGAAGATGATTCATGCGCAGATAGTGAGGCTGGGTTTGGATGCATTTGACTTGGTGGGAAGAACTTTGGTAGAGTTGTATGACATGAATGGTTTTTTTAATGTGGATGAACCAGTTGAAGGAAAATATGTAATGGAATTGAATTATTGGAATAACTTGATTTCAGAGGCATTTGAAAATGGAAAAATGGAGGAAAGCTTTAAACTCTTTTGTAGGATGAGAAAGGAGAATATCCAACCTAATTCAATTACTGTGATTGGATTGTTAAGGTCCACTGTTGAGTTGAACTCACTGAAGACGGGACAGGCCCTACACTCTTTTGTTGTTGTGAGCTGCCTGTATGGAAAACTAACTGTGAATACTGCACTGTTGTCAATGTATGCAAAGTTGGGTAGTCTAGAAGATGCAAGAATGGTGTTTGAGAAAATGCCTGACAAGGACCTTGTAGTCTGGAACATTATGATTTCAGCATATTCAGGGAATGGATTTCCCAAGGAATCCTTAAAACTTGTATATTGTATGGTTAGATCAGGTTTTAGACCTGACTTGTTCACGGCAATTCCTGCTATTTCTTCTATCACACAGTTAAA 884 0.3937 MFHSHHRLLHIPIIFQTRFSSTSSSMLDLCTKPQHLQQLHARFFLHGLHQNQSLSSKLMDCYAKFGFLDLSHKLFSTLKTQIPCSFVLRSCFCLSHEQGKMIHAQIVRLGLDAFDLVGRTLVELYDMNGFFNVDEPVEGKYVMELNYWNNLISEAFENGKMEESFKLFCRMRKENIQPNSITVIGLLRSTVELNSLKTGQALHSFVVVSCLYGKLTVNTALLSMYAKLGSLEDARMVFEKMPDKDLVVWNIMISAYSGNGFPKESLKLVYCMVRSGFRPDLFTAIPAISSITQL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2214 294 Gene3D Tetratricopeptide repeat domain 214 293 IPR011990 GO:0005515
Pvu9g2214 294 PANTHER - 16 80 - -
Pvu9g2214 294 PANTHER - 86 293 - -
Pvu9g2214 294 PANTHER - 16 80 - -
Pvu9g2214 294 PANTHER - 86 293 - -
Pvu9g2214 294 Gene3D Tetratricopeptide repeat domain 15 213 IPR011990 GO:0005515
Pvu9g2214 294 Pfam PPR repeat 219 245 IPR002885 -
Pvu9g2214 294 Pfam PPR repeat 247 277 IPR002885 -
Pvu9g2214 294 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Pvu9g2214 294 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Pvu9g2214 294 TIGRFAM PPR: pentatricopeptide repeat domain 148 179 IPR002885 -
Pvu9g2214 294 TIGRFAM PPR: pentatricopeptide repeat domain 219 247 IPR002885 -
Pvu9g2214 294 TIGRFAM PPR: pentatricopeptide repeat domain 247 280 IPR002885 -
Pvu9g2214 294 Pfam PPR repeat family 148 188 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2214 Pvu-Chr9 31731668 31732661 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2214 44 294 Glycoside Hydrolase AT3G49170 22.656 1.21e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2214 - - pvu:PHAVU_009G2147001 593.964