Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2519 ATGCTCCACACTCACCATTTGTTTCAGCTCTCTAACATTCCCAAAATCCCCAACATTCTACTTTTCCAAACGAGGTTTTTCAACACTTCCTCTTCTATATTAGATTTTTGCACCAAACCACAACACCTTCAACAAGTCCATGCCAGGTTCTTCCTCTATGGCCTCCACCAAAACTCATCACTTTCCTCCAAACTCGTGGATTCCTATGCCAAGTTTGGACTCATGGATTTATCCCAGAAACTCTTCTACTTCACTGAAAACCCAGATTCAGCTCTTTATAATGCAATCTTAAGAAACTTGTCTCAGTTTGGTGCATATGAAAAGACCCTCTTTTTGTACAAAGTGATGGTTGAGAAATCCATGTGCCCAGATGAAGAAAGTTGCTCTTTTGTTTTGAGATCATGTTTTTCTGTGTCTCATGAACAAGGGAAGATAGTTCATGGGCAGGTAGTGAAATTGGGTATGGATGCATTTAACATGGTGAGGAACGCTTTGATGGAGTTGTATGACAAAAATGGGTTTTTTAATGGGCATGAAACAGGAGGAGGAGGTTCTGTTATGGAATTGAATTATTGGAATAACTTGATTTCTCAGGCATCTGAAAGTGGGAAAATGGAGGGAAGTTTTCAACTCTTTTGTAGGATGAGAAAAGAGAATATCCAACCCAATTCAGTTACTGTGATTAACTTGTTAAGATCAGCAGTTAACTTGAACTTATTGAAGATAGGACAAGTCCTCCACTCTTTGATTGTTGTGAGCAACTTGTGTGAAGAACTAACTGTGAATACTGCACTGTTGTCAATGTATGCAAAGTTGGGTAGTCTAAAAGATGCAAGAATGCTATTTGAGAAAATGCCTGAGAAGGACCTTGTAGTTTGGAACATAATGATTTCAGCATATGCTGGGAACGGGTGCCCTAAGGAATCCTTAGAACTTGTATATTGCATGTTTAGATCAGGTTTTAGACCTGACTTGTTCACAGCAATCCCCGCAATTTCATCGATTGCACAGTTAAAATATACGGAATGGGGAAAGCAAATGCATGCCCATGTGATAAGAAATGGTTCAGATTATCAGGTATCCATTCACAATTCTCTTATTGACATGTATTCTGCGTGCAGCAACTTAGATTCGGCACATAAGATTTTTGGATTGATAGGGGACAAGACTGTGGTTACATGGAGTGCAATGATCAAAGGATATGCAATGCATGACCAATCTCTTGAGGCTCTGTCTCTATTCTTAAACATGAAGTTGAGTGGTACTAGAGTTGACTTCATTATAGTCATTAACATCTTGCCAGCGTTTGCAAAGATAGGGGCATTGCATTATGTAAGATACTTACACGGGTACTCATTGAAAACCAGCCTTGATTCACTCAAATCCCTTAAGACATCATTTCTCAGTAGCTATGCAAAGTGTGGTTGCATAGAAATGGCCAGAAAACTTTTTGATGAAGAGAAAAGTAGCCATAGAGATATAATTGCTTGGAACTCTATGATCAGTGCATATTCTAAACATGGAGAGTGGTTTAGATGTTTTGATTTGTACAACCAAATGAAACTATCAAACATTATGCCAGACCAAGTAACATTTCTGGGGCTGCTCACAGCTTGTGTTAACTCAGGCCTTGTTAATGAAGGCAAGGAGATTTTCAAGGAGATGGTGGGAATATATGGTTACCAACCTAGTCAAGAACACCATGCCTGTATGGTTGATCTACTAGGACGCGCTGGACAAATCGATGAAGCCAGTGAAATAATAGAAACTATTCCGTTCGAGTCAGATGCCAGAGTTTATGGCCCCTTGTTGAGTGCCTGTAAAATGCACTCTGAGACACGTTTGGCAGAACTTGCTGCTCAGAAACTTATAAATATGGAACCTAAAAATGCTGGAAACTATGTATTGCTCTCTAATATATATGCTGCTGCTGGAAAGTGGGACAAAGTTGCTAAAATGAGGAGTTTTCTCAGAGAGAGAGGACTGAAGAAAACACCAGGTTGCAGCTGGCTTGAATTAAATGGAAAAGTACATGAGTTTCGTGTTGCGGATCAATCTCATCCAAGATGGGAAGATATATATTCAATATTAAAAGTTCTTGAGTTGGAAGCAGGGGATATGAAAGATGATGATCTTGAACTCTTTGACACTCCTATCATTAAGGGATGTGAACTGTACATGAATCAACTCAAGCACCTATAA 2202 0.3928 MLHTHHLFQLSNIPKIPNILLFQTRFFNTSSSILDFCTKPQHLQQVHARFFLYGLHQNSSLSSKLVDSYAKFGLMDLSQKLFYFTENPDSALYNAILRNLSQFGAYEKTLFLYKVMVEKSMCPDEESCSFVLRSCFSVSHEQGKIVHGQVVKLGMDAFNMVRNALMELYDKNGFFNGHETGGGGSVMELNYWNNLISQASESGKMEGSFQLFCRMRKENIQPNSVTVINLLRSAVNLNLLKIGQVLHSLIVVSNLCEELTVNTALLSMYAKLGSLKDARMLFEKMPEKDLVVWNIMISAYAGNGCPKESLELVYCMFRSGFRPDLFTAIPAISSIAQLKYTEWGKQMHAHVIRNGSDYQVSIHNSLIDMYSACSNLDSAHKIFGLIGDKTVVTWSAMIKGYAMHDQSLEALSLFLNMKLSGTRVDFIIVINILPAFAKIGALHYVRYLHGYSLKTSLDSLKSLKTSFLSSYAKCGCIEMARKLFDEEKSSHRDIIAWNSMISAYSKHGEWFRCFDLYNQMKLSNIMPDQVTFLGLLTACVNSGLVNEGKEIFKEMVGIYGYQPSQEHHACMVDLLGRAGQIDEASEIIETIPFESDARVYGPLLSACKMHSETRLAELAAQKLINMEPKNAGNYVLLSNIYAAAGKWDKVAKMRSFLRERGLKKTPGCSWLELNGKVHEFRVADQSHPRWEDIYSILKVLELEAGDMKDDDLELFDTPIIKGCELYMNQLKHL* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2519 733 Gene3D Tetratricopeptide repeat domain 27 175 IPR011990 GO:0005515
Apr1g2519 733 Gene3D Tetratricopeptide repeat domain 463 692 IPR011990 GO:0005515
Apr1g2519 733 Gene3D Tetratricopeptide repeat domain 190 343 IPR011990 GO:0005515
Apr1g2519 733 Pfam PPR repeat 263 289 IPR002885 -
Apr1g2519 733 Pfam PPR repeat 291 321 IPR002885 -
Apr1g2519 733 Pfam PPR repeat 392 421 IPR002885 -
Apr1g2519 733 Pfam PPR repeat 192 220 IPR002885 -
Apr1g2519 733 Pfam PPR repeat 465 486 IPR002885 -
Apr1g2519 733 Pfam PPR repeat 363 384 IPR002885 -
Apr1g2519 733 Pfam E motif 610 672 IPR046848 -
Apr1g2519 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
Apr1g2519 733 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 3 711 - -
Apr1g2519 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Apr1g2519 733 Pfam PPR repeat family 493 540 IPR002885 -
Apr1g2519 733 TIGRFAM PPR: pentatricopeptide repeat domain 496 528 IPR002885 -
Apr1g2519 733 TIGRFAM PPR: pentatricopeptide repeat domain 392 425 IPR002885 -
Apr1g2519 733 TIGRFAM PPR: pentatricopeptide repeat domain 291 324 IPR002885 -
Apr1g2519 733 TIGRFAM PPR: pentatricopeptide repeat domain 192 223 IPR002885 -
Apr1g2519 733 TIGRFAM PPR: pentatricopeptide repeat domain 263 291 IPR002885 -
Apr1g2519 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Apr1g2519 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Apr1g2519 733 Gene3D Tetratricopeptide repeat domain 348 449 IPR011990 GO:0005515
Apr1g2519 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Apr1g2519 733 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 3 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2519 Apr-Chr1 34773981 34776381 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2519 29 714 Glycoside Hydrolase AT3G49170 28.835 3.17e-98 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2519 - - gmx:102669772 1219.14