Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1739 ATGGCGAGCGAACAAATGAAGCCCATTGCCACCCTTCTTTTGGGGCTGAACTTCTGCATGTATGTCATAGTTTTGGGCATTGGTGGATGGGCCGTGAACAGAGCCATAGATCATGGCTTTGTTATAGGTCCAGGATTTGATCTTCCTGCTCATTTTTCACCCATATACTTCCCTATGGGAAATGCTGCCACTGGATTCTTCGTGACATTTGCTTTGATTGCTGGAGTTGTTGGTGTTGGATCAATAATTTCAGGAGTCAATCATGTCCGTTCATGGACTTCAGAGAGCTTGCCATCTGCAGCTTCAGTTGCTTTCATTGCATGGGCTCTTACCGTTCTTGCCATGGGCTTTGCCTGCAAAGAGATTCAGCTTAACATCAGAAATGCTCGACTGAAAACAATGGAGGCTTTTCTGATTATCCTTTCAGCTACACAGCTTTTCTACATAGCTGCTATCCATGGTGCTGCTGCATACAGGAGATGA 483 0.4534 MASEQMKPIATLLLGLNFCMYVIVLGIGGWAVNRAIDHGFVIGPGFDLPAHFSPIYFPMGNAATGFFVTFALIAGVVGVGSIISGVNHVRSWTSESLPSAASVAFIAWALTVLAMGFACKEIQLNIRNARLKTMEAFLIILSATQLFYIAAIHGAAAYRR 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1739 160 Pfam AWPM-19-like family 16 155 IPR008390 -
Ssu1g1739 160 PANTHER AWPM-19-LIKE FAMILY PROTEIN 1 160 IPR008390 -
Ssu1g1739 160 PANTHER ABA INDUCED PLASMA MEMBRANE PROTEIN 1 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1739 Ssu-Chr1 43049662 43051050 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1739 1 154 Miscellaneous Gene Families AT5G46530 71.429 7.19e-82 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1739 - - gmx:100527291 301.212