Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2209 ATGCTCCACTCTCACCACCATTTGTTACATCTCTTTAACATTTCCAGAATCTTCCAAACAAGGTTTTCTAGCACTTCCTCTTCTATGATAGATCTCTGCACCAAACCCCAACACCTTCAACAACTCCATGCGAGGTTCTTCCTCCATGGCCTCCACCAAAACCAATCTCTTTCCTCCAAACTCATGGATTGCTACGCCAAATTTGGACTCCTGGACTTATCGCAGAAGCTTTTTTACTACACTCAAAACCCAGATATCGTTCTCTACAGAGCAATCTTAAGAAACGTGTACCAATTTGGTGAATATGACAATACCCTCATTTTGTACAAAGCGATGGTTGGGAAGTCCCCGTACCCAGATGAAGAAAGTTGCTCTTTTGTTTTGAGATCTTGCTATTGTTTGTCTCATGAACTAGGGAAGATGGTTCATGGGCAGATAGTGAGGCTGGGTTTGGATGCATTTCACTTGGTGGGAAGAACTTTGGTAGAGTTGTATGACATGAATGGTATTTTTAATGTGGATGAACCAGCTGAAGGAAAATATGTAATGGAATTGAATTATTGGAATACCTTGATTTCAAAGGCATCTGAAAATGGAAAAATGGAGGAAAGCTTTAAACTCTTTTGTAGGATGAGAAAGGAGAATATCCAACCTAATTCAATTACTGTGATTGGATTGTTAAGGTCCGTTGTTGAGTTGAACTTACTAAAGACGGGACAAGCCCTACACTCTTTTGTTGTGGTGAGCTGCCTGTGTGGAGAACTAACTGTGAATACTGCATTGTTGTCAATGTATGCAAAGTTGGGTAGTCTAGAAGATGCAAGAATATTGTTTGAGAAAATGCCTGACAAGGACCTTGTAGTCTGGAACATAATGATTTCAGCATATTCAGGGAATGGATTCCCCAAAGAATCCTTAGAACTTGTATATTGTATGGTTAGATCAGGTTTTAGACCTGACTTTTTCACGGCAATTCCTGCTATTTCTTCTATCACACAGTTAAAGTATAATGAATGGGGAAAGCAAATGCATGCGCATGTGATAAGAAATGGTTCAGATTATCAGGTATCCATTCACAATTCTCTTATTGACATGTATTCCGCATGTGATGACTTAAATTTGGCACAAAAGATTTTTGGCTTCATAATGAACAAGACTGTGGTTTCATGGAGTGCAATGATCAAAGGTTATACAATGCATGATCAGCCTCTTGAGGCTCTATCTCTTTTGTTGCAAATGAAGTTGAGTGGTACTAGACTTGACTTCATTATAGTCATTAACATCTTGCCAGCCTTTGCAAAGATAGGGGCATTGCATTATGTAAGTTACTTACACGGTTACTCGTTGAAAACCAGCCTTGATTCCCTCAAATCCCTTAAGACATCCTTTCTTAGTAGCTATGCAAAATGTGGTTGCATAAAAATGGCCAAAAAGCTTTTTGACGAAGAGAAAAGTATCCATAGAGATATAATTGCGTGGAACTCAATGATTAGTGCGTATTCTGAACATGGGGAGTGGTTTAGATGTTTTCATTTGTACAGCCAAATGAAACTATCGAACATTGTACCAGACCAAGTAACATTTCTTGGGCTGCTCACAACTTGTGTTAATTCAGGCCTTGTTAACAAAGGCAAGGAGATTTTCAAGGAAATGGTGGAAATATATGGTTACCAACCTTGTCAGGAGCATCATACTTGTATGGTTGATCTACTCGGACGTGCTGGCCAAATCCATGAAGCCAATGAAATAATAAAAACTATTCCATTGGAGTCAGATGCCAGGGTTTATGGCCCCTTGTTGAGTGCCTGTAAGATGCACTCAGATACCCGTTTAGCAGAACTTGCTGCTCAGAAGCTTATAAATATGGAACCTAAAAATGCTGGAAACTATGTATTGCTCTCCAATATATATGCTGCAGCAGGAAAGTGGGACAAAGTTGCTAGAATGAGGAGTTTTCTTAGAGATAGAGGACTAAAGAAAACACCAGGTTGTAGTTGGCTTGAATTAAATGGACAAGTGCATGACTTTCGTGTTGCAGATAAATCTCATCAAAGATGGGAGGATATATACTCAATATTAAATGTACTGGAGTTGGAAGCAGGGGATATGGAAGATGATCTTGAACTCTTTGACCCTTCTGTCATTAAGGAATGTGAATTGCACATGAATCAACCCAACCTAAGACATAAAACCTTATAA 2199 0.3911 MLHSHHHLLHLFNISRIFQTRFSSTSSSMIDLCTKPQHLQQLHARFFLHGLHQNQSLSSKLMDCYAKFGLLDLSQKLFYYTQNPDIVLYRAILRNVYQFGEYDNTLILYKAMVGKSPYPDEESCSFVLRSCYCLSHELGKMVHGQIVRLGLDAFHLVGRTLVELYDMNGIFNVDEPAEGKYVMELNYWNTLISKASENGKMEESFKLFCRMRKENIQPNSITVIGLLRSVVELNLLKTGQALHSFVVVSCLCGELTVNTALLSMYAKLGSLEDARILFEKMPDKDLVVWNIMISAYSGNGFPKESLELVYCMVRSGFRPDFFTAIPAISSITQLKYNEWGKQMHAHVIRNGSDYQVSIHNSLIDMYSACDDLNLAQKIFGFIMNKTVVSWSAMIKGYTMHDQPLEALSLLLQMKLSGTRLDFIIVINILPAFAKIGALHYVSYLHGYSLKTSLDSLKSLKTSFLSSYAKCGCIKMAKKLFDEEKSIHRDIIAWNSMISAYSEHGEWFRCFHLYSQMKLSNIVPDQVTFLGLLTTCVNSGLVNKGKEIFKEMVEIYGYQPCQEHHTCMVDLLGRAGQIHEANEIIKTIPLESDARVYGPLLSACKMHSDTRLAELAAQKLINMEPKNAGNYVLLSNIYAAAGKWDKVARMRSFLRDRGLKKTPGCSWLELNGQVHDFRVADKSHQRWEDIYSILNVLELEAGDMEDDLELFDPSVIKECELHMNQPNLRHKTL* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2209 732 Pfam PPR repeat 259 285 IPR002885 -
Pvu9g2209 732 Pfam PPR repeat 287 317 IPR002885 -
Pvu9g2209 732 Pfam PPR repeat 461 482 IPR002885 -
Pvu9g2209 732 Pfam PPR repeat 388 417 IPR002885 -
Pvu9g2209 732 Gene3D Tetratricopeptide repeat domain 176 254 IPR011990 GO:0005515
Pvu9g2209 732 Gene3D Tetratricopeptide repeat domain 255 343 IPR011990 GO:0005515
Pvu9g2209 732 Gene3D Tetratricopeptide repeat domain 344 441 IPR011990 GO:0005515
Pvu9g2209 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Pvu9g2209 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Pvu9g2209 732 TIGRFAM PPR: pentatricopeptide repeat domain 388 421 IPR002885 -
Pvu9g2209 732 TIGRFAM PPR: pentatricopeptide repeat domain 492 524 IPR002885 -
Pvu9g2209 732 TIGRFAM PPR: pentatricopeptide repeat domain 287 320 IPR002885 -
Pvu9g2209 732 TIGRFAM PPR: pentatricopeptide repeat domain 188 219 IPR002885 -
Pvu9g2209 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Pvu9g2209 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Pvu9g2209 732 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 185 242 - -
Pvu9g2209 732 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 3 165 - -
Pvu9g2209 732 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 247 708 - -
Pvu9g2209 732 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 3 165 - -
Pvu9g2209 732 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 185 242 - -
Pvu9g2209 732 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 247 708 - -
Pvu9g2209 732 Gene3D Tetratricopeptide repeat domain 19 150 IPR011990 GO:0005515
Pvu9g2209 732 Gene3D Tetratricopeptide repeat domain 458 688 IPR011990 GO:0005515
Pvu9g2209 732 Pfam E motif 606 668 IPR046848 -
Pvu9g2209 732 Pfam PPR repeat family 188 229 IPR002885 -
Pvu9g2209 732 Pfam PPR repeat family 489 536 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2209 Pvu-Chr9 31676549 31679743 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2209 23 699 Glycoside Hydrolase AT3G49170 27.770 5.83e-92 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2209 - - gmx:102669772 1222.22