Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0056 ATGACATGTTCCACACTCAAACATTGGATTCATGTGCTTAACATTCCCAAAATCTCCAACATTAAGACAAGGTTTTTTACCACATCATCTTCATCAATATTGAATCTTTGCACCAAACCAAAGCACCTTCAACAAATCCATGCAAGGTTCTTTCTCCATGGCCTACACCAAAACTCATTCCTTTCCTCCAAACTCATTGATTGTTATGCCAAGTTTGGTCTTTTATGTTTATCACAGAAAATCTTTCATTTCACTGAAAACCCAGATTCAGTTCTTTACAATGCAATCTTAAGAAACTTGTCTCAGTTTGGTGAATATGAAAAGACCCTTTTTTTGTATAAGGAAATGGTTGAGAAATCAATGTACCCAGATGAAGAAAGTTTCTCTTTTGTTTTGAGGTGTTGTTTTTCTCTGTCACATGAACAAGGAGTTATGATTCTTGGGCAGATAGTGAAATTGGGTATGGATGAGTTTGACTTGGTGGCAAACACTTCGAAAGAGTTGTATGAAAATAATGGTTTTTTCACATTTTTGAATGAGCACAAGTCATTTGAAAGAATGTCTATTAGAGAATTGAATTATTGGAATAACTTGATTTCTGAGGCTTGTGGAAGTGGGAAAATTGAGGAAAGCTTTCAGCTTTTTTGTGGGATGAGGAAAGAGAATATTCAACCTAATTCAGTTACTGTGATTAACTTGTTAAGGTTATCTATTGATTTGAATTCATTGAAGATAGGACAAGCCCTTCACTCTGTGGCTATTGTGAGCAATTTGTGTGAAGAACTTTCCGTGAATACTGCACTTTTGTCAATGTATGTGAAGTTAAGGAGTTTAGAAGATGCAAGACTGGTATTTGAGAAAATGCCTGAGAAGGACCTTGTAGTGTGGAATATAATGATTTCAGCATATGTGACGAATGGGTACCCTAAGGATTCCTTAGAACTTTTATATTGCATGGTTAGATCAGGGTTTAGACCTGACTTGTTTACGGCAATCCCTGCAATTTCCTCGATCACACAGTTAAAATATACTGAGTGGGGAAAACAGATGCATGCTCATGTGGTAAGAAATGGTTCAGATTATCAGGTGTCTGTTCATAATTCTCTTATTGACATGTATTCTGCATGCAATGCCTTAAATTCAGCACAGAAAGTTTTCGGCATGATAACGGAGAAGACGGTGGTTTCATGGAGTGCAATGATCAAAGGATATGCAATGCATGATCAGTCTCTTGAGGCTCTATCTCTCCTTTCAAAAATGAAGCTGAGTGGTACTAGAGTTGACTTCATTATAGTGATAAACATCTTGCCTGCGTTTGCAAAGATCGGGGCATTACATTATGTAAGATACCTACATGGATACTCATTGAAAGCAAACCTTGATTCACTAAAATCTGTCAAGACGTCGTTTCTCAGTAGCTATGCAAAATGTGGCTGTATAGAGATGGCCAGAAAGCTGTTTGATGAAGAGAAAAGAAAGCGTAAAGATCTAATTGCGTGGAACTCTATGATCAGTGCATATTCTAAACATGGAGAGTGGTTTCAATGTTTTCAATTGTACAACCAAATGAAACTATCAGATATTATACCAGACCAAGTAACATTTCTTGGCTTGCTCACAGCTTGTGTTAACTCGGGTCTTGTCGACAAAGGCAAAGAAATTTTCAAGGAGATGGTGGAAATATATGGCTACCAACCTAGCCAGGAACACCATGCATGTATGGTTGATCTACTAGGACGTGCCGGAAAAGTTGATGAAGCCCGAAAAATAATAGACAATATTTCCCTTAAGCCAGATGCCAAGGTTTATGGTCCCTTGTTGAGTGCCTATAAGATACACCCAGATACCCGTTTTGCCGAAAATGCTGCTCAGAAACTTATAAGTATGGAACCTAAAAATGCTGGAAACTATGTATTGCTCTCGAATATATATGCTGCAGCAGGAAAGTGGGATAAAGTTGCTAAAATGAGGAGCTTTCTTAGAGATAGAGGACTAAAGAAAATACCTGGATGTAGCTGGCTCGAATTAAATGGACAAGTACACGAGTTTCGTGTTGCAGATCAATCTCATCCAAGTTCTACCGATATATATTCGGTATTAAAAGTACTGGAGTTCGAAGCAGGGGATATGGAGGATTATCTTGAACTCTTTGACCCTCCTATCATTTAA 2169 0.3776 MTCSTLKHWIHVLNIPKISNIKTRFFTTSSSSILNLCTKPKHLQQIHARFFLHGLHQNSFLSSKLIDCYAKFGLLCLSQKIFHFTENPDSVLYNAILRNLSQFGEYEKTLFLYKEMVEKSMYPDEESFSFVLRCCFSLSHEQGVMILGQIVKLGMDEFDLVANTSKELYENNGFFTFLNEHKSFERMSIRELNYWNNLISEACGSGKIEESFQLFCGMRKENIQPNSVTVINLLRLSIDLNSLKIGQALHSVAIVSNLCEELSVNTALLSMYVKLRSLEDARLVFEKMPEKDLVVWNIMISAYVTNGYPKDSLELLYCMVRSGFRPDLFTAIPAISSITQLKYTEWGKQMHAHVVRNGSDYQVSVHNSLIDMYSACNALNSAQKVFGMITEKTVVSWSAMIKGYAMHDQSLEALSLLSKMKLSGTRVDFIIVINILPAFAKIGALHYVRYLHGYSLKANLDSLKSVKTSFLSSYAKCGCIEMARKLFDEEKRKRKDLIAWNSMISAYSKHGEWFQCFQLYNQMKLSDIIPDQVTFLGLLTACVNSGLVDKGKEIFKEMVEIYGYQPSQEHHACMVDLLGRAGKVDEARKIIDNISLKPDAKVYGPLLSAYKIHPDTRFAENAAQKLISMEPKNAGNYVLLSNIYAAAGKWDKVAKMRSFLRDRGLKKIPGCSWLELNGQVHEFRVADQSHPSSTDIYSVLKVLEFEAGDMEDYLELFDPPII* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0056 722 Pfam PPR repeat family 495 543 IPR002885 -
Lan14g0056 722 Pfam PPR repeat family 88 135 IPR002885 -
Lan14g0056 722 Pfam PPR repeat family 195 233 IPR002885 -
Lan14g0056 722 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Lan14g0056 722 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 5 713 - -
Lan14g0056 722 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Lan14g0056 722 TIGRFAM PPR: pentatricopeptide repeat domain 533 560 IPR002885 -
Lan14g0056 722 TIGRFAM PPR: pentatricopeptide repeat domain 195 226 IPR002885 -
Lan14g0056 722 TIGRFAM PPR: pentatricopeptide repeat domain 266 294 IPR002885 -
Lan14g0056 722 TIGRFAM PPR: pentatricopeptide repeat domain 294 327 IPR002885 -
Lan14g0056 722 TIGRFAM PPR: pentatricopeptide repeat domain 91 125 IPR002885 -
Lan14g0056 722 TIGRFAM PPR: pentatricopeptide repeat domain 395 428 IPR002885 -
Lan14g0056 722 TIGRFAM PPR: pentatricopeptide repeat domain 499 531 IPR002885 -
Lan14g0056 722 Pfam PPR repeat 294 324 IPR002885 -
Lan14g0056 722 Pfam PPR repeat 266 292 IPR002885 -
Lan14g0056 722 Pfam PPR repeat 468 489 IPR002885 -
Lan14g0056 722 Pfam PPR repeat 395 424 IPR002885 -
Lan14g0056 722 Gene3D Tetratricopeptide repeat domain 465 696 IPR011990 GO:0005515
Lan14g0056 722 Gene3D Tetratricopeptide repeat domain 18 171 IPR011990 GO:0005515
Lan14g0056 722 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Lan14g0056 722 Gene3D Tetratricopeptide repeat domain 181 258 IPR011990 GO:0005515
Lan14g0056 722 Gene3D Tetratricopeptide repeat domain 337 451 IPR011990 GO:0005515
Lan14g0056 722 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 566 IPR002885 -
Lan14g0056 722 Gene3D Tetratricopeptide repeat domain 259 336 IPR011990 GO:0005515
Lan14g0056 722 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Lan14g0056 722 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 5 713 - -
Lan14g0056 722 Pfam E motif 613 675 IPR046848 -
Lan14g0056 722 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
Lan14g0056 722 SUPERFAMILY TPR-like 271 656 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0056 Lan-Chr14 805681 808160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0056 31 703 Glycoside Hydrolase AT3G49170 29.300 4.53e-99 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0056 - - gmx:102669772 1140.18