Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1816 ATGGACTGCTACGCCAAGATTGGCCTCCAAGGTTTGTCCCAGAAAATCTACTTCACTGAAAACCCAGATTCTCTTCTTTACAGTGCCATCTTAAGGAACTTGTCTCGGTTTTGTGAGCATGAAAAGACCCTCTTTTTGTACAAGGAAATGGTAGAGAAATCAATGTACCCAGATGAAGATTGTTGTTGCTTTTTGTTGAGATCTTATTTCTCTCTGTCTGATGAACAAGGGAGGATGGTTCATGGGCAGATGCTGAAACTGGGTTTTGATTCATTTGATTTGGTGTGCAACACTTTGATTGAGTTGTATAGTGATTTGTTAAAAGTGGCTATTGAGTTGAAATCATTGAAGATAGGAAAAGCCCTCCACAATCTGGTGGTTGTTAGCAAATTGTGTGAAGAATTTTCTGTGAATACTGCACTGTTGTCAATGTATGTCAAGTTGGGTAGTCTAGAAAATGCAAAGTTATTGTTTGATAAAATGCCTGAGAAGGACCTTGTAGTTTGGAACATAATGGTTTCAGCATATGCAGGAAATGGGTGCCCTAAGGAATCCTTAAAACTTTTACATTGTATGGTTAAATCAAGAGTAAGGTCGGATTTGTTTACTGCAATCCCTGCGATTTCTTCAATCACGCAATTGAAAAATATTGAATGGGGCAAGCAAATGCATGCTCACGTGATAAGAAATGGTTCGGATTGCCAGGCATTACTTTATGTTAGATACTTACATGGCTACTCATTGAAAGCAAGCCTTGATTCACTCAGATCCGTTAAGACATCGTTTCTTAGCAGCTATGCAAAACGTGGTTGCATAGAGATGGCCAGAAAGCTTTTTGATGAAGAGAAAAACAGCCACAAAGATCTAATTGCATGGAACTGTATGATCAATGCGTATTCTAAACACGACGAATGGTTTCAATGTTTTGAGTTGTACGACCAAATGAAACTATCAAATATTATTCCAGATAAAGTAACATTTCTTGGCCTGCTTACAGCTTGTGTCAACTCAGGCCTTGTTATTGAAGGCAAGAAGATTTTCAAGGAAATGGTGGAAATATATGGCTGCCAACCCAGCCGGGAACACCATGCCTGTATGGTTGATCTACTAGGACGTGCCGGACAAATCGATGAAGCTATCGAAATAGTAGAAACTATTCCCTTTAAGCCAGATGCCAGGGTTTATGGTCCCCTGCTGAGTGCTTGTAAGTTACACTCAGAGACTCGTTTTGCAGAAATTGCTACTCAGAAGCTTATAAATATGGAACCTAAAAATGCTGGAAACTATGTGTTGCTTTCCAATATATATGCTGCAGCAGGAAAGTGGGAAAAAGTTGCTAAAATGAGAAGTTTTATTAGAGATAAAGGAATAAAGAAAATACCTGGTTGCAACTGGCTAGAATTAAATGGACAAGTACATGAGTTTCGTGTTGCTGATCAATCTCATCCAAGATCAAAAGATATATATTCAGTATTAGAAATACTGGAGTTGGAAGCAGTGGATCTGGAGGATGATCTTGAACTCTTTGGCCATCTTATCATTTAA 1545 0.3871 MDCYAKIGLQGLSQKIYFTENPDSLLYSAILRNLSRFCEHEKTLFLYKEMVEKSMYPDEDCCCFLLRSYFSLSDEQGRMVHGQMLKLGFDSFDLVCNTLIELYSDLLKVAIELKSLKIGKALHNLVVVSKLCEEFSVNTALLSMYVKLGSLENAKLLFDKMPEKDLVVWNIMVSAYAGNGCPKESLKLLHCMVKSRVRSDLFTAIPAISSITQLKNIEWGKQMHAHVIRNGSDCQALLYVRYLHGYSLKASLDSLRSVKTSFLSSYAKRGCIEMARKLFDEEKNSHKDLIAWNCMINAYSKHDEWFQCFELYDQMKLSNIIPDKVTFLGLLTACVNSGLVIEGKKIFKEMVEIYGCQPSREHHACMVDLLGRAGQIDEAIEIVETIPFKPDARVYGPLLSACKLHSETRFAEIATQKLINMEPKNAGNYVLLSNIYAAAGKWEKVAKMRSFIRDKGIKKIPGCNWLELNGQVHEFRVADQSHPRSKDIYSVLEILELEAVDLEDDLELFGHLII* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1816 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Aev04g1816 514 Pfam PPR repeat family 287 335 IPR002885 -
Aev04g1816 514 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 236 506 - -
Aev04g1816 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Aev04g1816 514 Pfam PPR repeat 139 165 IPR002885 -
Aev04g1816 514 Pfam PPR repeat 167 196 IPR002885 -
Aev04g1816 514 Pfam PPR repeat 260 281 IPR002885 -
Aev04g1816 514 TIGRFAM PPR: pentatricopeptide repeat domain 291 323 IPR002885 -
Aev04g1816 514 TIGRFAM PPR: pentatricopeptide repeat domain 27 59 IPR002885 -
Aev04g1816 514 TIGRFAM PPR: pentatricopeptide repeat domain 167 198 IPR002885 -
Aev04g1816 514 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 118 235 - -
Aev04g1816 514 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 103 - -
Aev04g1816 514 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 236 506 - -
Aev04g1816 514 Pfam E motif 405 467 IPR046848 -
Aev04g1816 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 23 57 IPR002885 -
Aev04g1816 514 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 118 235 - -
Aev04g1816 514 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 103 - -
Aev04g1816 514 Gene3D Tetratricopeptide repeat domain 259 495 IPR011990 GO:0005515
Aev04g1816 514 SUPERFAMILY TPR-like 145 445 IPR011990 GO:0005515
Aev04g1816 514 Gene3D Tetratricopeptide repeat domain 15 117 IPR011990 GO:0005515
Aev04g1816 514 Gene3D Tetratricopeptide repeat domain 118 229 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1816 Aev-Chr4 14453251 14455186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1816 103 511 Glycoside Hydrolase AT3G49170 31.144 1.48e-71 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1816 - - ahf:112732293 494.582