Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1429 ATGACATGTTCCACACTCAAACATTTGATTCATGTCCTTAACATTCCCAAAATCTGCAACATTAACACAAGGTTTTTTAGCACAACCTCTTCTTCTATATTGAATCTTTGCACCAAACCAAAGCACCTTCAACAAATCCATGCAAGGTTCTTTCTTCATGGCCTCCACCAAAACTCATCTCTTTCCTCCAAACTCATTGATTCTTATGCCAAGTTTGGTCTTTTATCTTTATCACAGAAAATCTTTCATTTTACTGAAAACCCAGATTCAGTTCTTTACAATTCAATCTTAAGAAACTTGTCTCAGTTTGGTGAATATGAAAAGACCCTTTTTTTGTATAAGGAAATGGTTGAGAAATCAATGTACCCAGATGAAGAAAGTTACTCTTTTGTTTTGAAGTGTTGTTTTTCTCTCTCACATGAACAAGGAGGTATGATTCATGTGCAGATAGTGAAACTGGGTATGGATGAATTTGACTTGGTGGCAAACACTTTGAAAGAATTGTATGAAAAGAATGGTTTTTTCACTTTTTTGAATGAGCACCAATCATTTGAAAGAATGTCTGTGAGAGAATTGAATTATTGGAATAACATGATTTGTGAGGCTTGTGGAAGTGGGAAAATTGAGGAAAGCTTTCAGCTTTTTTGTGGGATGAGAAAAGAGAATGTTCAACCTAATTCAGTTACTGTGATTAACTTGTTAAGGTTATCTATTGATTTGAATTCATTGAAGATAGGACAAGCCCTTCACTCAGTAGCTATTGTGAGCAATTTGTGTGAAGAACTTTCTGTGAATACTGCACTTTTGTCAATGTATGTGAAGTTAAGGAGTTTAGAAGATGCAAGAATGGTATTTGAGAAAATGCCTGAGAAGGACCTTGTAGTCTGGAATATAATGATTTCAGCATATATGGGGAATGGTTTCCCTAAGGAATCCTTAGAACTTCTATATTGTATGGTTAGATCAGGTTTTCGACCCGACTTGTTTACGGCAATCCCTGCAATTTCGTCGATCACACGGTTAAAATATACTGAGTGGGGAAAACAGATGCATGCTAATGTGGTAAGAAATGGTTCAAATTATCAGGTGTCTGTTCATAATTCTCTTATTGACATGTATTCTGCATGCAATGCCTTAAATTCAGCACAGAAAGTTTTTGGCTTGATAACGGCGAAGTCGGTGGTTTCATGGAGTGCAATGATCAAAGGATATGCAATGCATGATCGGTGTCTCGAGGCTCTAAATCTCCTTTCAAAAATGAAGCTGAGTGGTACTAAAGTTGACTTCATTATAGTCATTAACATCTTACCAGTTTTTGCAAAGATGGGAGCATTACATTATGTAAGATACTTACATGGATACTCATTGAAAGCAAACCTCGATTCGCTAAAATCCGTGAAGACGTCGTTTCTCAGTAGCTATGCAAAATGTGGATGTATAGAGATGGCCAGAAAGCTTTTTGATGAAGAAAAAAGGAACCATAAAGATCTAATTGCATGGAACTCTATGATCAGTGCATATTCTAAACATGGAGAGTGGTTTCAATGTTTTCAATTGTACAACAAAATGAAACTATCGGATATTATACCAGACCAAGTAACATTTCTTGGTCTGCTCACAGCTTGTGTTAATTCCGGCATTGTCGACAAAGGCAAAGAAATTTTCAAGGAGATGGTGGAAACATATCGCTACGAACCTAGTCAGGAACACCATGCATGTATGGTTGATCTACTAGGACGTGCCGGACAAGTTGATGAAGCCAGAAAAATAATAGACACTATTTCCCTTAAGCCAGATGCCAAGGTTTATGGTCCCCTTTTGAGTGCCTGTAAGATACATGCGGATACCCGTTTTGCCGAAACTGCTGCTCAGAAGCTTATAAATATGGAACCTAAAAATGCTGGAAACTATGTATTGCTCTCGAATATATATGCTGCAGCAGGAAGGTGGGACAAAGTTGCTAAAATGAGGAGCTTTCTTAGAGATAGAGGACTAAAGAAAATACCTGGATGTAGCTGGCTGGAATTAAATGGACAAGTACATGAGTTTCGTGTTGCAGATCAATCTCATCCCCGATCTAACGATATATATTCGGTATTAAAAGTACTGGAGCTCGAAGCCGGGGAGGATATGGAGGATTATCTTCAACTCTCTCTTTGA 2160 0.3755 MTCSTLKHLIHVLNIPKICNINTRFFSTTSSSILNLCTKPKHLQQIHARFFLHGLHQNSSLSSKLIDSYAKFGLLSLSQKIFHFTENPDSVLYNSILRNLSQFGEYEKTLFLYKEMVEKSMYPDEESYSFVLKCCFSLSHEQGGMIHVQIVKLGMDEFDLVANTLKELYEKNGFFTFLNEHQSFERMSVRELNYWNNMICEACGSGKIEESFQLFCGMRKENVQPNSVTVINLLRLSIDLNSLKIGQALHSVAIVSNLCEELSVNTALLSMYVKLRSLEDARMVFEKMPEKDLVVWNIMISAYMGNGFPKESLELLYCMVRSGFRPDLFTAIPAISSITRLKYTEWGKQMHANVVRNGSNYQVSVHNSLIDMYSACNALNSAQKVFGLITAKSVVSWSAMIKGYAMHDRCLEALNLLSKMKLSGTKVDFIIVINILPVFAKMGALHYVRYLHGYSLKANLDSLKSVKTSFLSSYAKCGCIEMARKLFDEEKRNHKDLIAWNSMISAYSKHGEWFQCFQLYNKMKLSDIIPDQVTFLGLLTACVNSGIVDKGKEIFKEMVETYRYEPSQEHHACMVDLLGRAGQVDEARKIIDTISLKPDAKVYGPLLSACKIHADTRFAETAAQKLINMEPKNAGNYVLLSNIYAAAGRWDKVAKMRSFLRDRGLKKIPGCSWLELNGQVHEFRVADQSHPRSNDIYSVLKVLELEAGEDMEDYLQLSL 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1429 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Lal4g1429 719 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 5 713 - -
Lal4g1429 719 Pfam PPR repeat 294 324 IPR002885 -
Lal4g1429 719 Pfam PPR repeat 468 489 IPR002885 -
Lal4g1429 719 Pfam PPR repeat 395 424 IPR002885 -
Lal4g1429 719 Pfam PPR repeat 266 292 IPR002885 -
Lal4g1429 719 Gene3D Tetratricopeptide repeat domain 464 696 IPR011990 GO:0005515
Lal4g1429 719 Gene3D Tetratricopeptide repeat domain 17 169 IPR011990 GO:0005515
Lal4g1429 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
Lal4g1429 719 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 5 713 - -
Lal4g1429 719 TIGRFAM PPR: pentatricopeptide repeat domain 195 226 IPR002885 -
Lal4g1429 719 TIGRFAM PPR: pentatricopeptide repeat domain 266 294 IPR002885 -
Lal4g1429 719 TIGRFAM PPR: pentatricopeptide repeat domain 294 327 IPR002885 -
Lal4g1429 719 TIGRFAM PPR: pentatricopeptide repeat domain 395 428 IPR002885 -
Lal4g1429 719 TIGRFAM PPR: pentatricopeptide repeat domain 91 125 IPR002885 -
Lal4g1429 719 TIGRFAM PPR: pentatricopeptide repeat domain 499 531 IPR002885 -
Lal4g1429 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Lal4g1429 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Lal4g1429 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Lal4g1429 719 Gene3D Tetratricopeptide repeat domain 249 345 IPR011990 GO:0005515
Lal4g1429 719 Gene3D Tetratricopeptide repeat domain 170 248 IPR011990 GO:0005515
Lal4g1429 719 Pfam PPR repeat family 495 543 IPR002885 -
Lal4g1429 719 Pfam PPR repeat family 88 135 IPR002885 -
Lal4g1429 719 Pfam PPR repeat family 195 233 IPR002885 -
Lal4g1429 719 Gene3D Tetratricopeptide repeat domain 348 452 IPR011990 GO:0005515
Lal4g1429 719 SUPERFAMILY TPR-like 471 656 IPR011990 GO:0005515
Lal4g1429 719 Pfam E motif 613 675 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1429 Lal-Chr4 18462946 18465105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1429 27 706 Glycoside Hydrolase AT3G49170 29.251 5.23e-101 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1429 - - gmx:102669772 1118.22