Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00652 ATGAAGAGGAAGAGAACGAACGAAAGTGGTGAAAGAACAGAAAAAGATAGAGTCAGTGATTTACCAGATGAAATTCTTCAACATATAATGGAGTTTTTACCCACAAGACAAGCTATTCAGACTTGCGTGTTATCAAAACGATGGAAGAATCTTTGGAAAGGCATCACCACTTTGCATTTCAGATGGTGGAATGGAATTCGCAAATACAACAAACATGTCATTCAAGTTCTCTCTAATCGAGATGATTCTATTTCCATTCGCAGTATGAATTTGACAGTGTTCAATTCCACTGCACAAAAAGTGATGAACAATGCCATTAAATACGCTTCATTGCACCATGTCAAGGAGTTGACACTCATCATGGATATCAAGTCCAAACAAATACCCACTTCTTTCCTTCCCCTTGTTTTCAATTGCAAATCTTTAACCTCTCTTAACCTTTACGCCAATTCCTCTTCCTCTCCCTTGATACTTCCACCATCTCTTCCGCTACCGTTTTTGAAAACCATGCATCTCTCCAATGTCACATTCACACCGAGAGATGACAATAACGTCGAACCCTTCTCAGGCTGCACTTCGTTGACCACTTTGGTCCTTGAACATTCCATGCGTAGCCATTCATCAGAGACCACCCTTTGCATATCAAACCCTACCATTTCCATTTTCAGAATGGAAAACATAGTCTATTGGCATACTTTTCAACCCAAAGTTGTTCTTTCTCTTCCTAAACTCACTTCGATCACACTCGAGAATATTCACTTTTCCGCCTGTTATAAACTCACATGCACTTGTGATCTTCCTCTCCTTAAGGAAGTGAAAATCGACAATCGTGTTCATGTAGATTCTTCCATCATCGTGCATTGGTTACAAATGTTCTCTAACGTAAGAACTTTGATAATTTCATCTCGTACCCTAAAGGATTTATATCTTCATCCACTGGAAATTCAACCTCCCTCCTTTGCTAGATTGGAATTATTCAAAATCGAAAAGGATTCTAGAATTGTGATATCTAAAGTTTTGTTGCTTGCCTTTGACAGATGA 1041 0.3881 MKRKRTNESGERTEKDRVSDLPDEILQHIMEFLPTRQAIQTCVLSKRWKNLWKGITTLHFRWWNGIRKYNKHVIQVLSNRDDSISIRSMNLTVFNSTAQKVMNNAIKYASLHHVKELTLIMDIKSKQIPTSFLPLVFNCKSLTSLNLYANSSSSPLILPPSLPLPFLKTMHLSNVTFTPRDDNNVEPFSGCTSLTTLVLEHSMRSHSSETTLCISNPTISIFRMENIVYWHTFQPKVVLSLPKLTSITLENIHFSACYKLTCTCDLPLLKEVKIDNRVHVDSSIIVHWLQMFSNVRTLIISSRTLKDLYLHPLEIQPPSFARLELFKIEKDSRIVISKVLLLAFDR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00652 346 Gene3D - 3 54 - -
Vimu10g00652 346 Gene3D Ribonuclease Inhibitor 67 328 IPR032675 -
Vimu10g00652 346 PANTHER CYCLIN-LIKE F-BOX 15 330 - -
Vimu10g00652 346 Pfam F-box domain 19 55 IPR001810 GO:0005515
Vimu10g00652 346 ProSiteProfiles F-box domain profile. 15 66 IPR001810 GO:0005515
Vimu10g00652 346 CDD F-box_AtFBL13-like 18 53 - -
Vimu10g00652 346 SUPERFAMILY F-box domain 6 63 IPR036047 GO:0005515
Vimu10g00652 346 SMART fbox_2 21 61 IPR001810 GO:0005515
Vimu10g00652 346 SUPERFAMILY RNI-like 107 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00652 Vimu-Chr10 5564724 5566007 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00652 16 219 EF-hand Containing Proteins AT5G41840 29.075 3.72e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00652 - - vum:124828159 405.216