Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00643 ATGGCGCCAAAGAAACAAGGCAGTAGAAAAAAAGGCTCTGCGGCTTCCTCTAGAAAGTCCGCCTCCAAATCGTCATGCCACGCTACGTCAACTTCTGGCCACCCTACGTCATCTTCTGGCCACCCTACGTCATCGTCGTCTACCCACAATGTGTCCCCATCAACACCATTCTCGACATCACCACCGGTAACGTCGCTGCCGTCGGCCTGTTCGCCATCGGACAGTTCGCCATCGGCGTCAACAGTGACTACGACATCCGTGTCCACCTCGACTTCGACATCCGCGTCCGCAATGACATCATTGTCCGCGGCGTCGGTGGCGTCGGCGGCGTCATCCACGTTCGCTTCGGCCCTAACGTCAGCGATGGCATCTCTATCAATATCCGACCCCCTAATTCTTACCGACGAAATACCAATTAAGCTGAACGGCAAGAATTATTCTGAATGGAATGAGAAAGTTGAAGGTGTCTTGAAAGCGCGCAATCTGCTAGGGTTCGTGGAGAAGATCTTCGATCCTGAACCGTACGCAAGCGAAAGTGATCGTACGCAGAACACCGGAACCGAAAAGTTCCGGCAATGGTTTGTTCAAGATCAGATGTTGCGCACGTGGTTGTTATCGTCTATGCGCGAAGACCTTGCTTCTTTGATGGCCGGATGCCAATACGCGTGGCAGGTTTGGGAAACGGTGAAAGAACTCTTCCATTCTCAATTGGCGGTGAGGGTTTGGCAACTTAGGTCAGAGCTGGGGACAATAAAGAAAGGAAATTTGTCTGTGTCTGAGTACGTTGGCAAGATCCAAAGCATTGTTGATTCTTTGGCTGAAACAGGTAATCCTGTGTCTGAAGAAGATCACGTTGAAGCGGTCTTGGCAGGATTGCCAAAGGAGTTTGAGTCGGTCGTCAAAATGGCGCGAATGTTGGAGGGTCTCGCTCCTATCGCAGTTAGTAATATTGAAACCTGGTGTTTAGTCTTAGAAGAGAAATATACAAGTGAATATCGCCACGTTGACGGTGGAGGAGGCCCTTCAACTCAAGATGACGAACCATCTTGCTCCCCTGAGTGTTCTACTTCTGAAAGCGGTCGTGCAAGTCGTAGACGAAGAGGCCATGGTCGCGGTGGCCGCCATCGGGGCAGGAACTAG 1140 0.5132 MAPKKQGSRKKGSAASSRKSASKSSCHATSTSGHPTSSSGHPTSSSSTHNVSPSTPFSTSPPVTSLPSACSPSDSSPSASTVTTTSVSTSTSTSASAMTSLSAASVASAASSTFASALTSAMASLSISDPLILTDEIPIKLNGKNYSEWNEKVEGVLKARNLLGFVEKIFDPEPYASESDRTQNTGTEKFRQWFVQDQMLRTWLLSSMREDLASLMAGCQYAWQVWETVKELFHSQLAVRVWQLRSELGTIKKGNLSVSEYVGKIQSIVDSLAETGNPVSEEDHVEAVLAGLPKEFESVVKMARMLEGLAPIAVSNIETWCLVLEEKYTSEYRHVDGGGGPSTQDDEPSCSPECSTSESGRASRRRRGHGRGGRHRGRN 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00643 379 MobiDBLite consensus disorder prediction 1 85 - -
Vimu10g00643 379 MobiDBLite consensus disorder prediction 334 379 - -
Vimu10g00643 379 Pfam gag-polypeptide of LTR copia-type 195 305 - -
Vimu10g00643 379 MobiDBLite consensus disorder prediction 344 358 - -
Vimu10g00643 379 MobiDBLite consensus disorder prediction 13 85 - -
Vimu10g00643 379 PANTHER - 138 374 - -
Vimu10g00643 379 MobiDBLite consensus disorder prediction 364 379 - -
Vimu10g00643 379 Pfam gag-polypeptide of LTR copia-type 137 166 IPR029472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00643 Vimu-Chr10 5528616 5529755 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00643 - - vum:124828764 454.136