Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0092 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0093 . . . . Adu05g01099 . Aed11g1757 . . . . . . . . . . . Apr7g0549 . Arst5g01392 . Bach4g00077 . . . Bva08g00088 Bva11g02185 Car08g00196 . Cca06g01833 . . . . . . . . . Gma01g02237 Gma11g00179 . . Gso1g1902 Gso1g1902 . . . Lal16g0085 . . . . . . . . . . . . Lasa2g02748 . . . . . . . . . . . Mal6g0241 . Mepo5g00313 . Mesa17g00308 . . . Mtr5g0263 . Phac2g00371 . Phco4g00265 . . . Psa2g4204 . Pste1g01997 . Pte14g01304 . . . Pumo8g02376 . Pvu2g1665 . Rops1g02230 . Seca10g00294 . Spst2g00264 . Ssu2g2912 . . . Tpr2g3900 . Trre9g00328 . Tsu05g00242 . Vian10g00221 . . . . . Viun2g02643 . Vivi2g03932 . Vra11g0243 .
Vvi2g0094 . . . . Adu05g01100 . Aed11g1758 . . . . . . . . . . . Apr7g0548 . Arst5g01393 . Bach4g00076 . . . Bva08g00087 Bva11g02186 Car08g00195 . Cca06g01834 . . . . . . . . . Gma01g02238 Gma11g00178 Gma05g02086 . Gso1g1903 Gso1g1903 Gso1g1903 . . . Lal23g0414 . . . . . . . . . . . Lasa2g02747 . . . . . . . . . Lja4g0365 Lja4g0365 Mal6g0242 . Mepo5g00312 . Mesa17g00307 . . . Mtr5g0262 . . . Phco4g00264 . . . . . Pste1g01995 . Pte14g01305 . . . Pumo8g02377 . Pvu2g1666 . . . Seca10g00293 . Spst2g00263 . Ssu2g2913 . Sto6g3154 . Tpr2g3901 . Trre9g00327 . Tsu05g00241 . Vian10g00220 . . . Vimu7g02409 . Viun2g02645 . Vivi2g03933 . Vra11g0242 .
Vvi2g0095 . . Accr9g00886 . Adu03g02698 . . . . . . Ahy13g2755 . Aip03g03085 . . . . . Apr2g1251 Arst3g03574 . . . Bisa11g0885 . . Bva11g02187 . Car06g00474 . . . . . . Enph13g1458 . Glsi05g2160 . . . Gma05g02087 Gma08g00191 . . . . . . . . Lal16g1174 . . . . . . . Lapu3g03636 . Lasa7g04824 . Lele49g0711 Lele50g0747 Lele51g0731 Lele52g0733 . . . . Lja4g0364 Lja4g0364 . Mal7g5004 Mepo2g04692 . Mesa13g00427 . Mibi12g1318 . . Mtr8g3522 . . Phco4g03354 . Prci10g1145 . . . Pste3g00893 . . . . . Pumo6g00442 . Pvu2g3036 . Rops2g00489 . Seca12g06557 . Spst3g01043 . . . Sto6g3153 . . Tpr3g0590 Trre7g05521 . . Tsu02g00398 Vian1g03881 . Vifa6g03627 . Vimu11g04483 . Viun3g00506 . Vivi5g06003 . . .
Vvi2g0096 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0097 . . . . . . Aed11g1759 . . . . . . . . . . . . . . . . . . . . Bva11g02188 . . Cca06g01835 . . . . . . . . . Gma01g02239 Gma11g00176 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco4g00263 . . . . . . . . . . . Pumo8g02378 . Pvu2g1668 . . . . . Spst2g00262 . Ssu2g2915 . . . . . . . . . . . . . . . . . . . . .
Vvi2g0098 Acco11g1553 . Accr7g00227 . Adu03g02696 . . . . Aev03g3121 . Ahy13g2753 . Aip03g03083 Alju09g1548 . . . . . Arst3g03570 . Bach4g00075 . Bisa11g0884 . Bva08g00086 . . Car06g00473 . . Dere09g0144 . . . Enph13g1459 . Glsi05g2161 . . . . Gma08g00193 . . . . . . . Lal15g1428 Lal16g1173 . . . . . . . Lapu3g03637 . Lasa7g04832 . Lele49g0712 Lele50g0749 Lele51g0732 Lele52g0735 . . . . Lja4g0363 Lja4g0363 . . . . . . Mibi12g1317 . . . Phac2g04444 . Phco4g03355 . Prci10g1146 . . Psa7g0653 Pste3g00889 . Pte14g01306 . . . Pumo6g00440 . Pvu2g3037 . Rops2g00488 . Seca12g06558 . Spst3g01040 . . . Sto6g3152 . . . . . . . Vian1g03882 . Vifa6g03631 . Vimu11g04485 . Viun3g00505 . Vivi5g06004 . . .
Vvi2g0099 . . . . . . . . . . . . . . . . . . . Apr2g1252 . . . . . . Bva08g00085 Bva11g02189 . Car06g00472 . . . . . . . . Glsi05g2162 . . . . Gma08g00194 . . . . . . Lal23g0419 . Lal16g1172 . . . . . . . Lapu3g03638 . . . . . . . . . . . Lja4g0362 Lja4g0362 . Mal7g5006 Mepo2g04693 . Mesa13g00423 . . . . Mtr8g3523 Phac2g04446 . Phco4g03356 . . . . Psa7g0652 . . . Pte12g00033 . . . . Pvu2g3038 . . . . . Spst3g01039 . . . Sto6g3151 . . . Trre7g05523 . . Tsu02g00396 . . . . . . . . Vivi5g06005 . . .
Vvi2g0100 . . . . . . . . . . . . . . . . . . . . . . . . . Bisa06g1755 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g00288 . . . . . . . . . . . . . Pvu10g1462 . . . . . Spst4g03311 . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0101 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 173 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi2g0092 Chr2 836515 837735 +
Vvi Vvi2g0093 Chr2 840068 844718 +
Adu Adu05g01099 Chr05 14902721 14906364 +
Aed Aed11g1757 Chr11 21058563 21061696 +
Apr Apr7g0549 Chr7 11938473 11942149 -
Arst Arst5g01392 Chr5 14953996 14957680 +
Bach Bach4g00077 Chr4 526215 529342 -
Bva Bva08g00088 Chr08 453101 456470 -
Bva Bva11g02185 Chr11 17830828 17834317 +
Car Car08g00196 Chr08 1537202 1541228 -
Cca Cca06g01833 Chr06 33731177 33735390 +
Gma Gma01g02237 Chr01 57570281 57573641 +
Gma Gma11g00179 Chr11 1399651 1403071 -
Gso Gso1g1902 Chr1 55738729 55742521 +
Gso Gso1g1902 Chr1 55738729 55742521 +
Lal Lal16g0085 Chr16 511126 514915 -
Lasa Lasa2g02748 Chr2 509540916 509544648 -
Mal Mal6g0241 Chr6 3389393 3391384 +
Mepo Mepo5g00313 Chr5 2756866 2760643 -
Mesa Mesa17g00308 Chr17 3299723 3303518 -
Mtr Mtr5g0263 Chr5 2448027 2452028 -
Phac Phac2g00371 Chr2 1851669 1854389 -
Phco Phco4g00265 Chr4 1679837 1683080 -
Psa Psa2g4204 Chr2 422645411 422649732 +
Pste Pste1g01997 Chr1 6249528 6250100 -
Pte Pte14g01304 Chr14 34194571 34198662 +
Pumo Pumo8g02376 Chr8 60973487 60977239 +
Pvu Pvu2g1665 Chr2 30372671 30376710 +
Rops Rops1g02230 Chr1 44180272 44184143 +
Seca Seca10g00294 Chr10 2550472 2554751 -
Spst Spst2g00264 Chr2 2010038 2013312 -
Ssu Ssu2g2912 Chr2 90458925 90462309 +
Tpr Tpr2g3900 Chr2 41729875 41734649 +
Trre Trre9g00328 Chr9 2365897 2369546 -
Tsu Tsu05g00242 Chr05 1780067 1783902 -
Vian Vian10g00221 Chr10 1944060 1947389 -
Viun Viun2g02643 Chr2 32126161 32129166 +
Vivi Vivi2g03932 Chr2 151618493 151622487 +
Vra Vra11g0243 Chr11 1651571 1655366 -
Vvi Vvi2g0094 Chr2 846972 848869 +
Adu Adu05g01100 Chr05 14906804 14907732 +
Aed Aed11g1758 Chr11 21061960 21062662 +
Apr Apr7g0548 Chr7 11936400 11937755 -
Arst Arst5g01393 Chr5 14958113 14959061 +
Bach Bach4g00076 Chr4 523796 525430 -
Bva Bva08g00087 Chr08 450465 452526 -
Bva Bva11g02186 Chr11 17835065 17836388 +
Car Car08g00195 Chr08 1535154 1535987 -
Cca Cca06g01834 Chr06 33736710 33738278 +
Gma Gma01g02238 Chr01 57574590 57575711 +
Gma Gma11g00178 Chr11 1398221 1398872 -
Gma Gma05g02086 Chr05 42137900 42138616 +
Gso Gso1g1903 Chr1 55743205 55744319 +
Gso Gso1g1903 Chr1 55743205 55744319 +
Gso Gso1g1903 Chr1 55743205 55744319 +
Lal Lal23g0414 Chr23 6736824 6739514 +
Lasa Lasa2g02747 Chr2 509532904 509533610 -
Lja Lja4g0365 Chr4 2905722 2906356 -
Lja Lja4g0365 Chr4 2905722 2906356 -
Mal Mal6g0242 Chr6 3392565 3393355 +
Mepo Mepo5g00312 Chr5 2754035 2755282 -
Mesa Mesa17g00307 Chr17 3297613 3298567 -
Mtr Mtr5g0262 Chr5 2446250 2447490 -
Phco Phco4g00264 Chr4 1678259 1678972 -
Pste Pste1g01995 Chr1 6246269 6247530 -
Pte Pte14g01305 Chr14 34198817 34200785 +
Pumo Pumo8g02377 Chr8 60977609 60979257 +
Pvu Pvu2g1666 Chr2 30377292 30378527 +
Seca Seca10g00293 Chr10 2548276 2549865 -
Spst Spst2g00263 Chr2 2007839 2008562 -
Ssu Ssu2g2913 Chr2 90463385 90464446 +
Sto Sto6g3154 Chr6 38223723 38224639 -
Tpr Tpr2g3901 Chr2 41735591 41737057 +
Trre Trre9g00327 Chr9 2362994 2364238 -
Tsu Tsu05g00241 Chr05 1778098 1779405 -
Vian Vian10g00220 Chr10 1942541 1943252 -
Vimu Vimu7g02409 Chr7 20637309 20642140 -
Viun Viun2g02645 Chr2 32129730 32131006 +
Vivi Vivi2g03933 Chr2 151624746 151626824 +
Vra Vra11g0242 Chr11 1649886 1651071 -
Vvi Vvi2g0095 Chr2 848928 850935 -
Accr Accr9g00886 Chr9 10485126 10487408 -
Adu Adu03g02698 Chr03 96912017 96913815 +
Ahy Ahy13g2755 Chr13 105181619 105183561 +
Aip Aip03g03085 Chr03 96744766 96746868 +
Apr Apr2g1251 Chr2 18777567 18780195 -
Arst Arst3g03574 Chr3 95775097 95777481 +
Bisa Bisa11g0885 Chr11 24615284 24617234 +
Bva Bva11g02187 Chr11 17836160 17838176 -
Car Car06g00474 Chr06 4771392 4773788 +
Enph Enph13g1458 Chr13 20150995 20153112 -
Glsi Glsi05g2160 Chr05 68010661 68012455 -
Gma Gma05g02087 Chr05 42138298 42141144 -
Gma Gma08g00191 Chr08 1681485 1683297 -
Lal Lal16g1174 Chr16 8035725 8038305 +
Lapu Lapu3g03636 Chr3 59837054 59839647 -
Lasa Lasa7g04824 Chr7 689841146 689843097 -
Lele Lele49g0711 Chr49 4313277 4315075 -
Lele Lele50g0747 Chr50 4605127 4606829 -
Lele Lele51g0731 Chr51 4408008 4409491 -
Lele Lele52g0733 Chr52 4650951 4652655 -
Lja Lja4g0364 Chr4 2903234 2905668 +
Lja Lja4g0364 Chr4 2903234 2905668 +
Mal Mal7g5004 Chr7 119183562 119187764 -
Mepo Mepo2g04692 Chr2 55286309 55288602 -
Mesa Mesa13g00427 Chr13 4919423 4921565 +
Mibi Mibi12g1318 Chr12 28776056 28778305 +
Mtr Mtr8g3522 Chr8 45832533 45836158 -
Phco Phco4g03354 Chr4 53994703 53999499 -
Prci Prci10g1145 Chr10 7655895 7657986 -
Pste Pste3g00893 Chr3 5570801 5573903 +
Pumo Pumo6g00442 Chr6 5508717 5512249 +
Pvu Pvu2g3036 Chr2 45844426 45846633 -
Rops Rops2g00489 Chr2 7015437 7018422 +
Seca Seca12g06557 Chr12 157678533 157687591 -
Spst Spst3g01043 Chr3 13736067 13738298 +
Sto Sto6g3153 Chr6 38221805 38223682 +
Tpr Tpr3g0590 Chr3 5795296 5798009 +
Trre Trre7g05521 Chr7 60962577 60965451 -
Tsu Tsu02g00398 Chr02 3282367 3285651 +
Vian Vian1g03881 Chr1 61947176 61949333 -
Vifa Vifa6g03627 Chr6 1195458987 1195460609 -
Vimu Vimu11g04483 Chr11 65849365 65851390 -
Viun Viun3g00506 Chr3 2984284 2986557 +
Vivi Vivi5g06003 Chr5 164616855 164619811 -
Vvi Vvi2g0096 Chr2 854452 854688 -
Vvi Vvi2g0097 Chr2 863784 867713 +
Aed Aed11g1759 Chr11 21065444 21069246 -
Bva Bva11g02188 Chr11 17849702 17855522 -
Cca Cca06g01835 Chr06 33749091 33752549 -
Gma Gma01g02239 Chr01 57579881 57581260 -
Gma Gma11g00176 Chr11 1374477 1378777 +
Phco Phco4g00263 Chr4 1662740 1667450 +
Pumo Pumo8g02378 Chr8 60995034 60999146 -
Pvu Pvu2g1668 Chr2 30393943 30398756 -
Spst Spst2g00262 Chr2 1996867 2005557 +
Ssu Ssu2g2915 Chr2 90485800 90487592 -
Vvi Vvi2g0098 Chr2 868574 869709 +
Acco Acco11g1553 Chr11 29991088 29991990 -
Accr Accr7g00227 Chr7 2924198 2925097 +
Adu Adu03g02696 Chr03 96864962 96865894 -
Aev Aev03g3121 Chr03 29855140 29856033 +
Ahy Ahy13g2753 Chr13 105163636 105164514 -
Aip Aip03g03083 Chr03 96723834 96725001 -
Alju Alju09g1548 Chr09 39394025 39394915 -
Arst Arst3g03570 Chr3 95728418 95729296 -
Bach Bach4g00075 Chr4 514382 515263 -
Bisa Bisa11g0884 Chr11 24582522 24583397 -
Bva Bva08g00086 Chr08 438534 440169 -
Car Car06g00473 Chr06 4752540 4753722 -
Dere Dere09g0144 Chr09 4218451 4219332 -
Enph Enph13g1459 Chr13 20161798 20162688 +
Glsi Glsi05g2161 Chr05 68022851 68023726 +
Gma Gma08g00193 Chr08 1701049 1702022 +
Lal Lal15g1428 Chr15 16414757 16415647 +
Lal Lal16g1173 Chr16 8032437 8033324 -
Lapu Lapu3g03637 Chr3 59855138 59856080 +
Lasa Lasa7g04832 Chr7 689950093 689950956 +
Lele Lele49g0712 Chr49 4320961 4321638 +
Lele Lele50g0749 Chr50 4617694 4618560 +
Lele Lele51g0732 Chr51 4417709 4418587 +
Lele Lele52g0735 Chr52 4663788 4664654 +
Lja Lja4g0363 Chr4 2877766 2878662 -
Lja Lja4g0363 Chr4 2877766 2878662 -
Mibi Mibi12g1317 Chr12 28754105 28755019 -
Phac Phac2g04444 Chr2 42495092 42496298 +
Phco Phco4g03355 Chr4 54016290 54017415 +
Prci Prci10g1146 Chr10 7669661 7671134 +
Psa Psa7g0653 Chr7 43783114 43783980 -
Pste Pste3g00889 Chr3 5530600 5531454 -
Pte Pte14g01306 Chr14 34214163 34215050 +
Pumo Pumo6g00440 Chr6 5482699 5484126 -
Pvu Pvu2g3037 Chr2 45864329 45865903 +
Rops Rops2g00488 Chr2 6974730 6975783 -
Seca Seca12g06558 Chr12 157713962 157715014 +
Spst Spst3g01040 Chr3 13703800 13704687 -
Sto Sto6g3152 Chr6 38206711 38209954 -
Vian Vian1g03882 Chr1 61974297 61975184 +
Vifa Vifa6g03631 Chr6 1197175399 1197176262 +
Vimu Vimu11g04485 Chr11 65875179 65876066 +
Viun Viun3g00505 Chr3 2967995 2968882 -
Vivi Vivi5g06004 Chr5 164655518 164656384 +
Vvi Vvi2g0099 Chr2 871450 872934 -
Apr Apr2g1252 Chr2 18791904 18795946 -
Bva Bva08g00085 Chr08 437460 437711 +
Bva Bva11g02189 Chr11 17855875 17857651 -
Car Car06g00472 Chr06 4749986 4752207 +
Glsi Glsi05g2162 Chr05 68024726 68026213 -
Gma Gma08g00194 Chr08 1703406 1704893 -
Lal Lal23g0419 Chr23 6803476 6804966 -
Lal Lal16g1172 Chr16 8029649 8031145 +
Lapu Lapu3g03638 Chr3 59863247 59865489 -
Lja Lja4g0362 Chr4 2874924 2877230 +
Lja Lja4g0362 Chr4 2874924 2877230 +
Mal Mal7g5006 Chr7 119219045 119220532 -
Mepo Mepo2g04693 Chr2 55303755 55305739 -
Mesa Mesa13g00423 Chr13 4887070 4888557 +
Mtr Mtr8g3523 Chr8 45849747 45851783 -
Phac Phac2g04446 Chr2 42501188 42504709 -
Phco Phco4g03356 Chr4 54018962 54019589 -
Psa Psa7g0652 Chr7 43780749 43782227 +
Pte Pte12g00033 Chr12 388131 391169 +
Pvu Pvu2g3038 Chr2 45885936 45890241 -
Spst Spst3g01039 Chr3 13700808 13702295 +
Sto Sto6g3151 Chr6 38204542 38206032 +
Trre Trre7g05523 Chr7 60979380 60980861 -
Tsu Tsu02g00396 Chr02 3268968 3271264 +
Vivi Vivi5g06005 Chr5 164657330 164659250 -
Vvi Vvi2g0100 Chr2 875537 881632 -
Bisa Bisa06g1755 Chr06 58885385 58888392 +
Phco Phco1g00288 Chr1 2088475 2099364 -
Pvu Pvu10g1462 Chr10 41253073 41258832 +
Spst Spst4g03311 Chr4 72956819 72964919 -
Vvi Vvi2g0101 Chr2 886305 886815 +