Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00288 ATGGCTTGCTTCGGAAGCACAATAGATAACTTCTCCTGCATTTGCCTTGGAGATTTCAGTTTGGCTTCCTTTTCCAGCCAAAGGTGCATAATAGACATTGTCAACATGTTTTTCCTGTGTGTCTTTTATGTATCATTGCTCTCTGATCTGATCAAGAAAAGACCTGCAAATGCAAGTGGTGGCTACCGAAATGGGTTGGTTCGGGTAGTTACTTCATTCTGTTGTACTCTTTTAAGCATTGCATATTTTATGGATGGTTTGTGGAATGTCATAACCAAAACCACAGGCTTCAATAAGCTGAACTTGTTGGTTTGCTTTGTGAGAGGACTAGTTTGGATATCTTTAGCAGCTTCATTGTTTGTTCAAAGATTTCAATGGATAAAAAAATTATGCTCTATTTGGTGGGTGTTTTCATGCACATTGGTTTCAGTACTCAATGCTGAAATTCTGCTCAAAGAGCATAGGTTTCAAATTTTTGATATGGCAATATGGCCAGTGCACATCCTAACAGTTCTCTGTGCCTTCCAAAACCATGGCTATTTTGTCCCACAAGAAATCCCAGGTGCCAGTTTATGTGATCCTCTATTAGTTCATAAGGAAATGCATAAACAAACAGGACTGGGCCATGTCTCCTTTCTCAGCAGATTCACTTTCTCTTGGATGAATGCTTTGTTGAGTTTGGGTTACTCAAAGCCACTGGCACTTGCAGACATCCCTTCTCTTACTTCTGAAGATAAAGCTGAATTTGCATACCAAAAATTTGCAAATGCATGGGTTTCCCTTTTGAGAGAAAGGGCCAGTAACAATTCCATAAACTTGGTCCTATGGTCCATAGCCCGAGTTTACATGAAAGAAAATATCTTCATAGCCATTTGCGCATTTCTGAGGACAATTTGTGCGGTTGTTTCTCCTTTACTTGTTTATGCTTTTGTAAACTATTCCAGTTGCAGTGAGGAAGACTTAAAACAAGGAATGGCCATAATGGGGTATCTTATATTAGCCAAGGTGGTTGAGTCTGTGTCTCAAAGACATTGGTCTTTTAATTCAAGGAGATTAGGAATGAAAATGAGATCTGCTTTAATGGCTGCAGTGTATCAAAAGCAATTAAAGCTTTCAGCTTTGGGTAGGAAAAAACATTCAACTGGCGAGATTGTGAATTACATTGCAGTTGACGCATATCGAATGGGGGAATTTCCATGGTGGTTTCATACATTGTTGTTTTCTGCATTGCAAGTTTTTCTGGCTTTTGGTGTCCTTTTTGGTGTTGTGGGTCTAGGTGCACTTCCTGGTTTGATGCCACTTCTCATTTGTGGATTTCTCAACGTACCGTTTGCAAAGATCCTTCAAAAACGTAGGTCGGAGTTTATGATTGCACAAGATGAGCGTCTGAGGTCAACTTCAGAGATTCTTAGTTGTATGAAAATCATAAAGCTACAGTCCTGGGAGGATAACTTCAAGAAGCTAGTTGAATCCCTTCGCGCTAAAGAGTTAAAATGTTTGGCTGAAGTACAGTTCATGAGAGCTTGTGGAACATTTATATATTGGATGTCTCCCACCATCATTTCTTCAGTTATCTTAATGGGATGTGCGCTTTTCACGAGTGCCCCTTTGGAGGCTGGAACTATTTTCACTGTTCTTACAACATTGAGAAGCATGGGGGAACCTGTCATACTGATTCCCGAAGCACTTTCTGTTCTGATCCAAGTTAAGGTCTCCTTTGATCGTCTCAACACCTTTTTGCTTGATGACGAGATAAAAGGTGATGATTTTGGAAGAACATCAAAAGATTCTTGCAGAAAGGGTGTTGAAATTCTAGCAGGCAGCTTCAGTTGGGATCAGCAGCAATCATTGCCTCTAACTTTGAGAGAAGTGAATTTTGAGATCAAGTGGGAGCAGACAGTAGCAGTTTGTGGCCCAGTTGGAGCCGGAAAAACATCTCTCCTGCATGCAATACTCGGAGAGATACCCAGAATTTCAGGAACTGTTAGAGTGGGGGGAACACTTGCCTACGTTTCCCAAATTCCTTGGATCCAAAGTGGTACAATTCGTGATAATGTTCTGTATGGAAAACCAATGGACCAAACCAGGTATGAATATACCATTAAGGTCTGTGCCTTGGATAAGGATATTGATGGATTTAGCCATGGTGATCTCACAGAAATAGGTGAGAGAGGGATTAACTTGAGTGGTGGACAAAAGCAAAGGATTCAACTAGCTCGTGCAGTCTATAATGATGCTGATATCTACCTCCTAGATGACCCTTTTAGTGCTGTAGATGCTCATACTGCCTCTATTATGTTTAATGATTGTGTCAGGACTGCTTTAAGAAGGAAAACAGTTATTCTTGTGACTCATCAAGTTGAATTTCTCTCAGAAGTTGATAAAATCCTGGTAATGGAAGGAGGAAAAATTAGTCAATCGGGTAGCTATGAAGATTTGTTGACTGCTGGAACAGCCTTTGAACAGCTTTTGAGTGCTCATAGAGAGGCAATTGCAGGAATAGAAACAAATAGTGCAAACAAAAGAGAAGTTCAAAATGTGGTTACAGTTCATCCTGAAGATTCTCATGTTTCTAATCTCACTAAATGTGGAAGTGAGGGGGAAATTTCTACCGAGATTCAACTTACACAAGAAGAAGAAAAGGAAAGTGGTGATGTTGGGTGGCAGGCATTCTGTGACTATATTTTGTTCCCTAAGGGGTCTTTTCTTCTATGTTTAAGCATATTAGCACAGTTGGCCTTTGTCGGTTTGCAGGCTGCGTCAACTTCTTGGCTTGCTATAGCCAATGAGATGTCAAAAGTAACTAGCAGCATCTTAGTTGGAGTTTATAGTGTGATTTCTTTTTTAAGCATTGTTTTTGTATTTCTGAGATCTTACTTTGCTGCACATCTTGGTTTAAAAGCTTCTAAAGCTTTCTTCTCTGCCTTCACTAATTCTATATTTAATTCTCCTATGTTGTTCTTTGATTCAACCCCATTTGGGAGGATTTTGACCCGAGCTTCATCAGATATGAGTATTTTAGATTTCGATATCCCTTTTTCCACCATCTTTGTGACAGCTGAAGTAACAGAACTTCTTACAATGATTGTGATAATGGCTTCAGTCACATGGCAAGTGCTCATTGTTGCAGTTCTTGCCATGGTGGCTTCAAAATATATTCAGGGCTACTATCAAGCTTCTGCAAGAGAAATTATACGAATCAGCGGAACTACAAAAGCTCCTCTTATGAATTTTACGGCTGAGACATATCTTGGTGTGGTTAGTATAAGAGCTTTTAACATGGCTGACAGATTTTTCAAAAACTACCTTAACCTTGTCGACACAGATGCCGCTATGTTCTTTCATTCCAATGCTGCCATCGAATGGTTAATTCTAAGGATTGAAGTACTTCAGAATTTGACATTCTTCACTGCAGCTTTGCTTCTTGTTCTACTTCCAAAGGGATATGTGGCCCCTGGCCTTGTGGGACTTTCTCTGTCTTATGCTTTTTCACTGAGAGGAACCGTGGTTTATCTGACTCAAATGTTTTGCAACTTATCAAACTATGTGATCTCTGTTGAAAGAATCAAGCAATTCATTCACATACCAGCAGAGCCTAGTGAAATTGTAGAGGACAATAGACCACCACCTTCTTGGCCTTCTAAAGGTAGAATAGATCTTCAATCTCTTGAGATTAGATATCGTCCAAATTCTCCATTAGTCCTGAAGGGCATCTCTTGCACGTTTGAAGAAGGGAGTAGAGTTGGAGTTGTAGGAAGAACAGGAAGTGGAAAAACTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTACTAGAGGTGACATTCTTATAGATGGGATTAATATATGCTCAATTGGGTTAAAAGACTTAAGAATAAAGCTAAGCATCATTCCTCAAGAACCAACTCTTTTCAAGGGTAGCATTCGAAATAACTTGGACCCTCTAGGCCTGTACTCTGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGTTCAAGGCAACAATCAGTAGCCTACCAAATCTCTTAGACACTTCTGTGAGTGGTGAAGGGGAAAACTGGAGTGTGGGGCAGCGCCAACTCATATGTCTTGGAAGGGTACTTCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGATTATGCCACAGATGTTATTCTACAACGAATCATCAGACAAGAATTTTCAGAATGCACAGTTATAACTGTGGCCCACAGAGTTCCCACTGTAATAGACAGTGATATGGTCATGGTCCTATCTTATGGGAAACTGATGGAGTATGACAAGCCTTCAAAGCTTATGGGTACTAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGTCCCACTGCAACAGGAATTTGTCCCCAAAAGATTAG 4398 0.4009 MACFGSTIDNFSCICLGDFSLASFSSQRCIIDIVNMFFLCVFYVSLLSDLIKKRPANASGGYRNGLVRVVTSFCCTLLSIAYFMDGLWNVITKTTGFNKLNLLVCFVRGLVWISLAASLFVQRFQWIKKLCSIWWVFSCTLVSVLNAEILLKEHRFQIFDMAIWPVHILTVLCAFQNHGYFVPQEIPGASLCDPLLVHKEMHKQTGLGHVSFLSRFTFSWMNALLSLGYSKPLALADIPSLTSEDKAEFAYQKFANAWVSLLRERASNNSINLVLWSIARVYMKENIFIAICAFLRTICAVVSPLLVYAFVNYSSCSEEDLKQGMAIMGYLILAKVVESVSQRHWSFNSRRLGMKMRSALMAAVYQKQLKLSALGRKKHSTGEIVNYIAVDAYRMGEFPWWFHTLLFSALQVFLAFGVLFGVVGLGALPGLMPLLICGFLNVPFAKILQKRRSEFMIAQDERLRSTSEILSCMKIIKLQSWEDNFKKLVESLRAKELKCLAEVQFMRACGTFIYWMSPTIISSVILMGCALFTSAPLEAGTIFTVLTTLRSMGEPVILIPEALSVLIQVKVSFDRLNTFLLDDEIKGDDFGRTSKDSCRKGVEILAGSFSWDQQQSLPLTLREVNFEIKWEQTVAVCGPVGAGKTSLLHAILGEIPRISGTVRVGGTLAYVSQIPWIQSGTIRDNVLYGKPMDQTRYEYTIKVCALDKDIDGFSHGDLTEIGERGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTASIMFNDCVRTALRRKTVILVTHQVEFLSEVDKILVMEGGKISQSGSYEDLLTAGTAFEQLLSAHREAIAGIETNSANKREVQNVVTVHPEDSHVSNLTKCGSEGEISTEIQLTQEEEKESGDVGWQAFCDYILFPKGSFLLCLSILAQLAFVGLQAASTSWLAIANEMSKVTSSILVGVYSVISFLSIVFVFLRSYFAAHLGLKASKAFFSAFTNSIFNSPMLFFDSTPFGRILTRASSDMSILDFDIPFSTIFVTAEVTELLTMIVIMASVTWQVLIVAVLAMVASKYIQGYYQASAREIIRISGTTKAPLMNFTAETYLGVVSIRAFNMADRFFKNYLNLVDTDAAMFFHSNAAIEWLILRIEVLQNLTFFTAALLLVLLPKGYVAPGLVGLSLSYAFSLRGTVVYLTQMFCNLSNYVISVERIKQFIHIPAEPSEIVEDNRPPPSWPSKGRIDLQSLEIRYRPNSPLVLKGISCTFEEGSRVGVVGRTGSGKTTLISALFRLVEPTRGDILIDGINICSIGLKDLRIKLSIIPQEPTLFKGSIRNNLDPLGLYSDDEIWKALEKCQFKATISSLPNLLDTSVSGEGENWSVGQRQLICLGRVLLKRNRILVLDEATASIDYATDVILQRIIRQEFSECTVITVAHRVPTVIDSDMVMVLSYGKLMEYDKPSKLMGTNSSFSKLVAEYWSHCNRNLSPKD 1465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00288 1465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1207 1451 IPR027417 -
Phco1g00288 1465 SUPERFAMILY ABC transporter transmembrane region 275 582 IPR036640 GO:0005524|GO:0016020
Phco1g00288 1465 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 602 826 IPR003439 GO:0005524
Phco1g00288 1465 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1220 1452 IPR003439 GO:0005524
Phco1g00288 1465 ProSitePatterns ABC transporters family signature. 728 742 IPR017871 GO:0005524|GO:0016887
Phco1g00288 1465 FunFam ABC transporter C family member 5 868 1199 - -
Phco1g00288 1465 Gene3D - 1201 1452 IPR027417 -
Phco1g00288 1465 Gene3D ABC transporter type 1, transmembrane domain 870 1199 IPR036640 GO:0005524|GO:0016020
Phco1g00288 1465 CDD ABCC_MRP_domain1 602 803 - -
Phco1g00288 1465 FunFam Multidrug resistance protein associated1 581 846 - -
Phco1g00288 1465 Pfam ABC transporter transmembrane region 906 1165 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phco1g00288 1465 Pfam ABC transporter transmembrane region 287 548 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phco1g00288 1465 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 287 568 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phco1g00288 1465 FunFam ABC transporter C family member 10 270 584 - -
Phco1g00288 1465 CDD ABC_6TM_ABCC_D1 288 576 IPR044746 GO:0140359
Phco1g00288 1465 Gene3D - 583 850 IPR027417 -
Phco1g00288 1465 Coils Coil 478 498 - -
Phco1g00288 1465 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 209 1454 - -
Phco1g00288 1465 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 900 1181 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phco1g00288 1465 Pfam ABC transporter 621 755 IPR003439 GO:0005524
Phco1g00288 1465 CDD ABC_6TM_ABCC_D2 900 1193 IPR044726 GO:0140359
Phco1g00288 1465 SMART AAA_5 1244 1437 IPR003593 GO:0016887
Phco1g00288 1465 SMART AAA_5 630 803 IPR003593 GO:0016887
Phco1g00288 1465 Gene3D ABC transporter type 1, transmembrane domain 274 582 IPR036640 GO:0005524|GO:0016020
Phco1g00288 1465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 825 IPR027417 -
Phco1g00288 1465 FunFam ABC transporter C family member 3 1201 1452 - -
Phco1g00288 1465 Pfam ABC transporter 1235 1383 IPR003439 GO:0005524
Phco1g00288 1465 SUPERFAMILY ABC transporter transmembrane region 896 1198 IPR036640 GO:0005524|GO:0016020
Phco1g00288 1465 CDD ABCC_MRP_domain2 1216 1436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00288 Phco-Chr1 2088475 2099364 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00288 1 2088475 2099364 Phco1g00288 1 2088475 2099364 ECH