Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0362 ATGGAGTCTTCTATAGCTGCTTCTCGCATCGGCCTTGCCGGCCTCGCCGTCATGGGCCAAAACCTCGCCCTCAACATCGCCGACAAAGGCTTCCCAATCTCCGTCTACAACCGCACCACCTCCAAAGTCGACGAAACCGTAGATCGGGCCCACCGCGAAGGCTCCCTCCCTCTCATCGGCCAGTACAACCCGCGTGACTTCGTCCTCTCCCTCCAACGCCCTAGATCGGTCATCATCCTCGTCAAGGCCGGCGCCCCCGTCGACCAAACCATCGCCGCCCTCTCCGAGCATCTCGAGCCTGGTGACTGCATCATCGACGGCGGTAACGAGTGGTATGAAAACACCGAGCGCCGAATCCAAACCGTCACCGAGAAGGGTCTCCTGTATCTCGGGATGGGCGTCTCCGGCGGCGAAGAGGGTGCTCGGAACGGGCCCTCGCTCATGCCCGGTGGGTCCTTCCAGGCCTACAATAACATTCAGGACATTTTGTTCAAGGTCGCTGCTCAGGTTGAAGATGGGCCTTGTGTGACTTATATCGGTGAAGGTGGTTCTGGAAACTTCGTGAAGATGGTGCATAATGGGATTGAGTATGGTGACATGCAGCTTATTTCTGAGGCTTATGATGTTTTGAAGCATGTGGGTGGTTTGTCGAATTCTGAGCTTGCTGATATTTTCGGTGAGTGGAATAGAGGTGAGCTTGAGAGCTTTCTCATTGAGATTACTGCGGATATTTTCAAGGTGAAGGATGAGGAGTTTGGTGCTGATGGGTATTTGGTGGATAAGATTTTGGATAAGACGGGTATGAAGGGTACTGGGAAATGGACCGTGCAGCAGGCGGCGGAGCTGTCAGTGGCGGCCCCGACTATCGCGGCGTCGTTGGATTGCAGGTTCTTGAGTGGGTTGAAGGAGGAGAGGGAGAATGCTGCGGCGGTGTTGAAGGAGGCAGGGTTGAGTGAGGGTGAGGAAGTGGGGTCTGTGAGAGTTGATAAGAAGCGGTTGATTGATGATGTGAGGCAGGCTTTGTATGCTTCCAAGATTTGCAGCTATGCTCAGGGGATGAACTTGCTGAGGGCGAAGAGCAATGAAAAAGGGTGGGGTTTGAATTTTGGGGAATTGGCTAGGATTTGGAAAGGTGGGTGCATTATTAGGGCAGTGTTTTTGGATAGGATCAAGAAGGCGTATCAGAGGAACCCTAACTTGGCGAGTTTGATAGTGGACCCTGAATTTGCTAAGGAAATGGTGCAGAGGCAAGCTGCGTGGAGAAGGGTTGTGGGGTTGGCTATATCAGCTGGGATTAGTACTCCAGGGATGTGTGCTAGTCTTGCTTACTTTGACACCTACCGGAGAGCGAGGCTTCCGGCGAACCTTGTTCAGGCTCAGAGGGACTTGTTTGGGGCTCACACCTATGAGCGGGTTGATCGCCCTGGCAATTTCCATACCGAGTGGACTAAACTTGCTCGCAAGAGTGGTACTGGAGTTGGTGCTCTCAATTGA 1494 0.5341 MESSIAASRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETVDRAHREGSLPLIGQYNPRDFVLSLQRPRSVIILVKAGAPVDQTIAALSEHLEPGDCIIDGGNEWYENTERRIQTVTEKGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYNNIQDILFKVAAQVEDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNSELADIFGEWNRGELESFLIEITADIFKVKDEEFGADGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRFLSGLKEERENAAAVLKEAGLSEGEEVGSVRVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSNEKGWGLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLIVDPEFAKEMVQRQAAWRRVVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRPGNFHTEWTKLARKSGTGVGALN* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0362 497 TIGRFAM gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 10 483 IPR006113 GO:0004616|GO:0006098
Lja4g0362 497 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 183 484 IPR008927 -
Lja4g0362 497 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE 1 492 IPR006183 GO:0004616
Lja4g0362 497 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING 3, CHLOROPLASTIC 1 492 - -
Lja4g0362 497 SMART 6PGD_2 185 483 IPR006114 GO:0004616|GO:0006098
Lja4g0362 497 PIRSF 6PGD 2 490 IPR006113 GO:0004616|GO:0006098
Lja4g0362 497 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 9 180 IPR006115 GO:0050661
Lja4g0362 497 Gene3D - 451 484 - -
Lja4g0362 497 Gene3D - 2 186 - -
Lja4g0362 497 PRINTS 6-phosphogluconate dehydrogenase signature 372 394 IPR006183 GO:0004616
Lja4g0362 497 PRINTS 6-phosphogluconate dehydrogenase signature 258 285 IPR006183 GO:0004616
Lja4g0362 497 PRINTS 6-phosphogluconate dehydrogenase signature 73 102 IPR006183 GO:0004616
Lja4g0362 497 PRINTS 6-phosphogluconate dehydrogenase signature 8 31 IPR006183 GO:0004616
Lja4g0362 497 PRINTS 6-phosphogluconate dehydrogenase signature 126 151 IPR006183 GO:0004616
Lja4g0362 497 PRINTS 6-phosphogluconate dehydrogenase signature 174 202 IPR006183 GO:0004616
Lja4g0362 497 Pfam 6-phosphogluconate dehydrogenase, C-terminal domain 185 482 IPR006114 GO:0004616|GO:0006098
Lja4g0362 497 Gene3D - 187 450 IPR013328 GO:0016491
Lja4g0362 497 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 182 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0362 Lja-Chr4 2874924 2877230 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0362 K00033 - zju:107406734 894.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0362 4 2874924 2877230 Lja4g0362 4 2874924 2877230 ECH