Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1172 ATGGACTCTGTTTCTGCTTTATCCCGCATAGGCCTAGCTGGCCTAGCCGTTATGGGTCAAAACCTTGCCCTTAACATCGCCGACAAGGGTTTCCCAATCTCCGTCTATAACCGAACAACCTCTAAGGTCGATGAGACCGTAGATCGTGCCCTTCGCGAGGGTACCCTGCCCTTAACCGGACACTACAACCCCCGCGACTTTGTTCTCTCCCTAACCCGTCCCCGTTCCGTTATCATCCTTGTCAAGGCCGGCGCCCCCGTCGACCAGACCATCGCCGCCCTCTCCGATTATATGGAACCCGGCGACGCCATAATTGACGGTGGTAATGAGTGGTACGAGAATACTGAACGCCGTATAGAACAGGTGAAAGAGAAAGGGATACTTTATTTAGGGATGGGTGTGTCTGGAGGTGAAGAAGGTGCAAGAAATGGACCCTCTCTTATGCCTGGTGGGTCCTACCAGGCTTATAGTAATGTTGAAGATATTTTGCATAAGATTTCTGCTCAGGTTAATGATGGAGCTTGTGTTACTTATATAGGTGAGGGTGGTGCTGGTAATTTTGTTAAGATGGTTCATAATGGGATTGAGTATGGGGATATGCAACTTATTTCTGAGGCTTATGATGTTTTGAAATATGTCGGGGGTTTGTCGAATTCCGAGCTTGCTGAGATTTTTGATGAGTGGAATAGAGGGGAGCTTGAGAGTTTTCTGATTGAGATTACTGCTGATATTTTTAAGGTTAAGGATTATGAGGGTGGAGATGGTTATTTGGTGGATAAGATTTTGGATAAGACTGGTATGAAGGGAACTGGGAAGTGGACTGTTCAGCAGGCGGCTGAGCTGTCAGTTGCGGCTCCGACAATTGCTGCTTCGTTGGATTGCAGGTATTTGAGTGGTTTGAAGGAGGAGAGGGAGAATGCCGCGAGTGTGCTGAAGGAGGCGGGGTTGAATGAGGAGGTTGGGGCTCTGAGGAGTGGGGTTGATAAGAAGAGGTTGATTGATGATGTTAGGCAAGCTTTGTATGCTTCTAAGATTTGTAGCTATGCTCAAGGGATGAATCTTTTGAGGGCCAAGAGTGTGGAGAAAGGGTGGGATTTGAATTTGGGGGAGTTGGCGAGGATTTGGAAAGGTGGGTGTATCATAAGAGCTGTGTTCTTGGATAGGATCAAGAAAGCTTATCAGAGGAATCCCAACTTGGCTAGTTTGATTGTCGACCCGGAATTTGCTAGAGAAATGGTGCAAAGGCAGGGAGCATGGAGAAGGGTTGTGGGGTTGGCTATATCATCTGGGATCAGCACACCTGGGATGTGTGCCAGTCTTGCTTACTTTGATACATATAGGAGAGCAAGGCTTCCTGCTAACCTTGTTCAGGCTCAGAGGGATTTGTTTGGGGCTCACACTTATGAAAGAGTTGATCGCCCCGGTGCTTTCCATACCGAGTGGACAAAAATTGCTCGCCAGAGCAGTGCTGCTGGAGTTGGAGCTTTCAATGGATGA 1497 0.4803 MDSVSALSRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETVDRALREGTLPLTGHYNPRDFVLSLTRPRSVIILVKAGAPVDQTIAALSDYMEPGDAIIDGGNEWYENTERRIEQVKEKGILYLGMGVSGGEEGARNGPSLMPGGSYQAYSNVEDILHKISAQVNDGACVTYIGEGGAGNFVKMVHNGIEYGDMQLISEAYDVLKYVGGLSNSELAEIFDEWNRGELESFLIEITADIFKVKDYEGGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERENAASVLKEAGLNEEVGALRSGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSVEKGWDLNLGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLIVDPEFAREMVQRQGAWRRVVGLAISSGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRPGAFHTEWTKIARQSSAAGVGAFNG 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1172 498 Pfam 6-phosphogluconate dehydrogenase, C-terminal domain 185 481 IPR006114 GO:0004616|GO:0006098
Lal16g1172 498 PRINTS 6-phosphogluconate dehydrogenase signature 8 31 IPR006183 GO:0004616
Lal16g1172 498 PRINTS 6-phosphogluconate dehydrogenase signature 73 102 IPR006183 GO:0004616
Lal16g1172 498 PRINTS 6-phosphogluconate dehydrogenase signature 126 151 IPR006183 GO:0004616
Lal16g1172 498 PRINTS 6-phosphogluconate dehydrogenase signature 174 202 IPR006183 GO:0004616
Lal16g1172 498 PRINTS 6-phosphogluconate dehydrogenase signature 257 284 IPR006183 GO:0004616
Lal16g1172 498 PRINTS 6-phosphogluconate dehydrogenase signature 371 393 IPR006183 GO:0004616
Lal16g1172 498 PIRSF 6PGD 3 490 IPR006113 GO:0004616|GO:0006098
Lal16g1172 498 Gene3D - 187 449 IPR013328 GO:0016491
Lal16g1172 498 SMART 6PGD_2 185 482 IPR006114 GO:0004616|GO:0006098
Lal16g1172 498 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 183 484 IPR008927 -
Lal16g1172 498 Gene3D - 450 483 - -
Lal16g1172 498 Gene3D - 2 186 - -
Lal16g1172 498 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 182 IPR036291 -
Lal16g1172 498 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING 3, CHLOROPLASTIC 1 492 - -
Lal16g1172 498 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE 1 492 IPR006183 GO:0004616
Lal16g1172 498 TIGRFAM gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 10 482 IPR006113 GO:0004616|GO:0006098
Lal16g1172 498 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 9 180 IPR006115 GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1172 Lal-Chr16 8029649 8031145 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1172 K00033 - zju:107406734 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1172 16 8029649 8031145 Lal16g1172 16 8029649 8031145 ECH