Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06005 ATGGACACTTCTACCCTTTCCCGTATCGGCCTCGCCGGCCTCGCCGTCATGGGCCAAAACCTAGCCCTAAACATCGCCGAAAAAGGCTTCCCCATCTCCGTCTACAATCGCACCACCTCCAAAGTCGACGAAACCGTAGATCGCGCCCACCGTGAAGGCTCCCTCCCTCTAACTGGTCAATACAGCCCCCGCGAGTTTGTGCTGTCTCTCCAACGGCCTAGATCGGTTATCATCCTCGTCAAAGCCGGTGCTCCGGTTGACCAAACGATTTCAGCTCTCTCTGATTATATGGAACCCGGGGATACTATCATCGACGGTGGGAACGAGTGGTATGAAAATACTGAAAGGAGGATTCGAGAAATTTCTGAGAAAGGTATTCTTTATCTCGGGATGGGGGTTTCTGGTGGCGAAGAAGGTGCGAGGAACGGTCCGTCGCTTATGCCGGGTGGATCTTATGAGGCTTATAGTAATATTCAGGATATTTTGGTGAAGGTTGCTGCTCAGGTTGAAGATGGGCCTTGTGTTACGTATATTGGTGAAGGAGGGAGTGGGAATTTTGTGAAGATGGTTCATAATGGGATTGAGTATGGTGACATGCAGCTTATTTCTGAGGCTTATGATGTTTTGAAGCATGTTGGTGGTTTGTCGAATTCGGAGCTTGCTGATATATTTGCTGAGTGGAATAGTGGGGAGCTTGAGAGTTTTCTGATTGAGATTACTGCAGATATTTTTAAGGTGAAGGATGAGGGTGGTGATGGGTATTTAGTGGATAAGATTTTGGATAAGACTGGGATGAAGGGTACTGGGAAATGGACGGTTCAGCAGGCGGCGGAGTTGTCGGTTGCGGCTCCGACTATTGCGGCGTCGTTGGATGGGAGGTTTTTGAGTGGATTGAAGGAGGAGAGGGAGAATGCGGCTGCGGTATTGAAGGAGGCTGGGTTGAGTGAGGAAGTGGGGTTTGTGAGAAGTGGGATTGATAAGAAGAAGTTGATTGATGATGTGAGACAAGCTTTGTATGCTTCTAAGATTTGTAGCTATGCGCAAGGGATGAATTTGTTGAGAGCAAAGAGTAATGAGAAAGGTTGGAATTTGAATTTTGGGGAGTTGGCGAGGATTTGGAAAGGTGGGTGTATTATACGAGCGGTGTTTTTGGATAGGATTAAGAAGGCTTATCAGAGGAACCCTAATTTGGCGAGTTTGATAGTGGATCCCGAATTCGCTAAGGAAATGGTGCAGAGACAAGGTGCGTGGAGAAGGGTTGTTGGATTGGCTATATCGTCCGGGATTAGTACTCCTGGAATGTGTGCTAGTCTGTCTTACTTTGATACATATAGGAGAGCAAGGCTTCCCGCTAACCTTGTTCAGGCTCAGAGGGACTTGTTTGGAGCTCATACCTACGAGCGTGTCGATCGCCCCGGCGCGTTTCATACCGAGTGGACGAAACTTGCTCGTCAGAGTGGCGCCGGCATACTTAATTGA 1479 0.4841 MDTSTLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVDRAHREGSLPLTGQYSPREFVLSLQRPRSVIILVKAGAPVDQTISALSDYMEPGDTIIDGGNEWYENTERRIREISEKGILYLGMGVSGGEEGARNGPSLMPGGSYEAYSNIQDILVKVAAQVEDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNSELADIFAEWNSGELESFLIEITADIFKVKDEGGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDGRFLSGLKEERENAAAVLKEAGLSEEVGFVRSGIDKKKLIDDVRQALYASKICSYAQGMNLLRAKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLIVDPEFAKEMVQRQGAWRRVVGLAISSGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERVDRPGAFHTEWTKLARQSGAGILN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06005 492 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 8 179 IPR006115 GO:0050661
Vivi5g06005 492 FunFam 6-phosphogluconate dehydrogenase, decarboxylating 186 447 - -
Vivi5g06005 492 Gene3D - 448 481 - -
Vivi5g06005 492 SMART 6PGD_2 184 480 IPR006114 GO:0004616|GO:0006098
Vivi5g06005 492 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 181 IPR036291 -
Vivi5g06005 492 PRINTS 6-phosphogluconate dehydrogenase signature 173 201 IPR006183 GO:0004616
Vivi5g06005 492 PRINTS 6-phosphogluconate dehydrogenase signature 72 101 IPR006183 GO:0004616
Vivi5g06005 492 PRINTS 6-phosphogluconate dehydrogenase signature 255 282 IPR006183 GO:0004616
Vivi5g06005 492 PRINTS 6-phosphogluconate dehydrogenase signature 7 30 IPR006183 GO:0004616
Vivi5g06005 492 PRINTS 6-phosphogluconate dehydrogenase signature 125 150 IPR006183 GO:0004616
Vivi5g06005 492 PRINTS 6-phosphogluconate dehydrogenase signature 369 391 IPR006183 GO:0004616
Vivi5g06005 492 PIRSF 6PGD 1 487 IPR006113 GO:0004616|GO:0006098
Vivi5g06005 492 FunFam 6-phosphogluconate dehydrogenase, decarboxylating 5 185 - -
Vivi5g06005 492 Pfam 6-phosphogluconate dehydrogenase, C-terminal domain 184 479 IPR006114 GO:0004616|GO:0006098
Vivi5g06005 492 FunFam 6-phosphogluconate dehydrogenase, decarboxylating 448 481 - -
Vivi5g06005 492 Gene3D - 186 447 IPR013328 GO:0016491
Vivi5g06005 492 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 182 481 IPR008927 -
Vivi5g06005 492 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE 6 483 IPR006183 GO:0004616
Vivi5g06005 492 NCBIfam decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase 9 480 IPR006113 GO:0004616|GO:0006098
Vivi5g06005 492 Gene3D - 5 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06005 Vivi-Chr5 164657330 164659250 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06005 K00033 - gmx:100803740 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06005 5 164657330 164659250 Vivi5g06005 5 164657330 164659250 ECH