Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2162 ATGGAGGCTTCAGCAGTTTTGTCGCGCATAGGGCTAGCGGGGCTTGCCGTTATGGGCCAAAACCTAGCCCTCAATATCGCCGACAAAGGCTTCCCAATCTCCGTCTACAACCGCACCACTTCCAAAGTTGACGAGACCGTAGATCGGGCTCGCCATGAGGGTTCCCTTCCACTCATCGGTCAATACAACCCTCGAGAGTTTGTCCTCTCTATCCAACGACCCAGATCAGTCATCATACTTGTCAAGGCTGGTGCTCCCGTTGACCAAACCATTGCTGCCCTCTCCGAACACATGGAATCTGGTGATTGCATCATCGACGGCGGTAACGAGTGGTACGAGAACACCGAACGTCGAATCCGACAAGTTGCTGACAAAGGTATCCTCTATTTGGGCATGGGTGTCTCTGGTGGCGAAGAGGGTGCCCGTAACGGACCGTCTTTGATGCCAGGGGGTTCTTATCAGGCCTACTCAAATGTCCAAGACATTTTGATGAAAGTAGCTGCTCAAGTCGAGGATGGCCCTTGTGTTACTTACGTTGGCGAGGGTGGGTCCGGAAATTTCGTTAAGATGGTCCACAACGGTATTGAATACGGAGATATGCAGCTCATTTCTGAGGCTTATGACGTGTTGAAGCACGTTGGGGGTTTGCCAAATTCAGAGCTTTCGGAGATTTTCTCTGAATGGAACAGAGGAGAACTCGAAAGTTTCCTGATTGAAATCACTGCCGATATTTTCAAAGTTAAAGACGAATCTGGAAATGGCGATTTGGTGGATAAGATTTTGGATAAAACGGGTATGAAGGGTACTGGAAAATGGACCGTACAACAGGCTGCGGAGCTCTCAATAGCAGCTCCGACAATTGCAGCTTCGTTGGATTGCCGTTACCTGAGTGGACTAAAGGAAGAGAGAGAGAATGCTGCTAATGTATTGAAGGAAGCAGGATTGCATGACGATGTGGGATCTGTAAAGTGCAGAGTTGACAAGAAGCGATTGATAGATGATGTGAGGCAAGCTTTGTATGCTTCAAAGATTTGTAGCTATGCTCAGGGGATGAATTTATTGAGGTCCAAGAGTGATGAGAAAGGTTGGAATTTGAATTTAGGTGAATTGGCGAGGATTTGGAAAGGGGGGTGTATCATACGAGCAGTGTTTCTGGATAGGATTAAGAAGGCTTATCAGAGAAATCCCAACCTGGCTAGTTTGGTAGTGGACCCAGAATTTGCAAGGGAGATGGTGCAAAGGCAGGCAGCCTGGAGAAGAGTTGTGGGATTAGCTGTATCAGCTGGGATCAGCACTCCAGGGATGTGTGCTAGTCTTGCTTATTTTGATACATATAGGAGGGCAAGGCTACCGGCCAATCTTGTTCAGGCTCAGAGGGATTTGTTTGGAGCTCATACTTATGAGCGGACTGATCGCCCTGGGTCTTTTCATACGGAGTGGACAAAACTTGCTCGAAAGAGCACTGCTGGGGTTGGTTCTCTACATTGA 1488 0.4819 MEASAVLSRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETVDRARHEGSLPLIGQYNPREFVLSIQRPRSVIILVKAGAPVDQTIAALSEHMESGDCIIDGGNEWYENTERRIRQVADKGILYLGMGVSGGEEGARNGPSLMPGGSYQAYSNVQDILMKVAAQVEDGPCVTYVGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLPNSELSEIFSEWNRGELESFLIEITADIFKVKDESGNGDLVDKILDKTGMKGTGKWTVQQAAELSIAAPTIAASLDCRYLSGLKEERENAANVLKEAGLHDDVGSVKCRVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSDEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGSFHTEWTKLARKSTAGVGSLH 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2162 495 Gene3D - 7 186 - -
Glsi05g2162 495 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 9 178 IPR006115 GO:0050661
Glsi05g2162 495 PRINTS 6-phosphogluconate dehydrogenase signature 126 151 IPR006183 GO:0004616
Glsi05g2162 495 PRINTS 6-phosphogluconate dehydrogenase signature 370 392 IPR006183 GO:0004616
Glsi05g2162 495 PRINTS 6-phosphogluconate dehydrogenase signature 256 283 IPR006183 GO:0004616
Glsi05g2162 495 PRINTS 6-phosphogluconate dehydrogenase signature 174 202 IPR006183 GO:0004616
Glsi05g2162 495 PRINTS 6-phosphogluconate dehydrogenase signature 73 102 IPR006183 GO:0004616
Glsi05g2162 495 PRINTS 6-phosphogluconate dehydrogenase signature 8 31 IPR006183 GO:0004616
Glsi05g2162 495 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 183 482 IPR008927 -
Glsi05g2162 495 NCBIfam decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase 10 481 IPR006113 GO:0004616|GO:0006098
Glsi05g2162 495 Pfam 6-phosphogluconate dehydrogenase, C-terminal domain 185 480 IPR006114 GO:0004616|GO:0006098
Glsi05g2162 495 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 182 IPR036291 -
Glsi05g2162 495 PIRSF 6PGD 3 489 IPR006113 GO:0004616|GO:0006098
Glsi05g2162 495 Gene3D - 187 448 IPR013328 GO:0016491
Glsi05g2162 495 Gene3D - 449 482 - -
Glsi05g2162 495 FunFam 6-phosphogluconate dehydrogenase, decarboxylating 6 186 - -
Glsi05g2162 495 SMART 6PGD_2 185 481 IPR006114 GO:0004616|GO:0006098
Glsi05g2162 495 FunFam 6-phosphogluconate dehydrogenase, decarboxylating 187 448 - -
Glsi05g2162 495 FunFam 6-phosphogluconate dehydrogenase, decarboxylating 449 482 - -
Glsi05g2162 495 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE 7 485 IPR006183 GO:0004616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2162 Glsi-ChrGlsi05 68024726 68026213 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g2162 05 68024726 68026213 Glsi05g2162 05 68024726 68026213 ECH