Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00033 ATGGAGGCTTCAGCGGCTCTATCTCGTATAGGTCTAGCTGGTCTGGCCGTCATGGGTCAAAATCTCGCTCTCAATATCGCCGAGAAAGGGTTTCCTATCTCAGTTTACAATCGCACCACTTCCAAGGTTCAGGAAACAGTCGAACGGGCTCATAAAGAAGGCGGCCTTCCACTTGTGGGTCAGTACAACCCACGTGATTTTGTTCTCTCCATTCAAAGACCCAGATCCGTTGTCATCCTCGTCAAGGCTGGTGCGCCTGTTGACCAAACCATCGCTGCTTTGTCGGAGCACATGGAGTCTGGAGATTGTATCATTGATGGAGGAAACGAGTGGTACGAGTACACCGAGCGTCGAATGAAAGAGGTTGCTGATAAGGGTATTCTGTATCTGGGTATGGGGGTTTCAGGTGGTGAAGATGGTGCTCGAAATGGACCCTCTCTAATGCCCGGTGGTTCTCATCAGGCTTATTCTAATGTACAAGACATATTGAAGAAGGTTGCTGCTCAGGTTGAAGATGGTCCCTGTGTTACCTATATAGGAGATGGTGGCTCTGGAAATTTCGTGAAGATGGTACACAATGGAATTGAGTATGGTGACATGCAGCTCATTTCCGAGGCGTACGATGTGTTGAAGAACGTGGGCGGGCTGTCAAATTCGGAACTTTCCAATATTTTTGGTGAATGGAATAGAGGGGAATTAGAAAGCTTTTTGATTGAGATTACAGCTGATATTTTCAAAGTCAAAGACGAGTTGACTGATGGGGATTTGGTTGATAAGATTTTGGACAAGACGGGAATGAAGGGTACTGGGAAATGGACGGTGCAGCAGGCAGCGGAGCTATCTGTAGCGGCGCCAACTATTGCTGCTTCATTGGACTGCAGGTACCTCAGTGGGTTGAAGGCCGAGAGAGAAAATGCCAGTAATGTTTTGAAGGAGGCAGGATTGAATGAGGAAGTGGGGTCTGCCAAGAGTGGGATTGATAAGAAGACATTGATTGATGATGTGAGGCAGGCTCTGTACGCCTCAAAGATTTGTAGCTATGCTCAGGGAATGAACTTGTTGAGGGCCAAGAGTGACGAGAAAGGATGGAACTTGAATTTGGGTGAATTGGCCAGAATATGGAAAGGTGGATGCATAATAAGAGCAGTGTTCCTGGAGAGGATTAAGAAGGCCTACCAGAGGAATCCGAATTTGGCAAGTTTGATTGTAGACCCCGAGTTTGCAAGGGAGATGGTGCAGAGGCAGACAGCTTGGAGAAGAGTTGTTGGGTTGGCTATTCAAGCTGGCATAAGCACTCCTGGAATGTGTGCCAGTCTTGCTTATTTTGATACTTATAGGAGAGCAAGGCTCCCAGCCAACCTTGTCCAGGCCCAGAGAGATTTATTTGGAGCGCACACCTATGAAAGGATTGATCTTCCAGGGGCTTTTCACACAGAGTGGACAAAGCTTGCTCGGAAGACTGACGCTGGTGTTGGTGCTTTGAACTGA 1488 0.4765 MEASAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVQETVERAHKEGGLPLVGQYNPRDFVLSIQRPRSVVILVKAGAPVDQTIAALSEHMESGDCIIDGGNEWYEYTERRMKEVADKGILYLGMGVSGGEDGARNGPSLMPGGSHQAYSNVQDILKKVAAQVEDGPCVTYIGDGGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNSELSNIFGEWNRGELESFLIEITADIFKVKDELTDGDLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKAERENASNVLKEAGLNEEVGSAKSGIDKKTLIDDVRQALYASKICSYAQGMNLLRAKSDEKGWNLNLGELARIWKGGCIIRAVFLERIKKAYQRNPNLASLIVDPEFAREMVQRQTAWRRVVGLAIQAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERIDLPGAFHTEWTKLARKTDAGVGALN* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00033 495 FunFam 6-phosphogluconate dehydrogenase, decarboxylating 449 482 - -
Pte12g00033 495 Pfam 6-phosphogluconate dehydrogenase, C-terminal domain 185 480 IPR006114 GO:0004616|GO:0006098
Pte12g00033 495 Gene3D - 6 186 - -
Pte12g00033 495 FunFam 6-phosphogluconate dehydrogenase, decarboxylating 6 186 - -
Pte12g00033 495 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 182 IPR036291 -
Pte12g00033 495 Gene3D - 187 448 IPR013328 GO:0016491
Pte12g00033 495 FunFam 6-phosphogluconate dehydrogenase, decarboxylating 187 448 - -
Pte12g00033 495 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE 6 485 IPR006183 GO:0004616
Pte12g00033 495 SMART 6PGD_2 185 481 IPR006114 GO:0004616|GO:0006098
Pte12g00033 495 Gene3D - 449 482 - -
Pte12g00033 495 NCBIfam decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase 10 481 IPR006113 GO:0004616|GO:0006098
Pte12g00033 495 Coils Coil 296 316 - -
Pte12g00033 495 PRINTS 6-phosphogluconate dehydrogenase signature 8 31 IPR006183 GO:0004616
Pte12g00033 495 PRINTS 6-phosphogluconate dehydrogenase signature 370 392 IPR006183 GO:0004616
Pte12g00033 495 PRINTS 6-phosphogluconate dehydrogenase signature 256 283 IPR006183 GO:0004616
Pte12g00033 495 PRINTS 6-phosphogluconate dehydrogenase signature 73 102 IPR006183 GO:0004616
Pte12g00033 495 PRINTS 6-phosphogluconate dehydrogenase signature 174 202 IPR006183 GO:0004616
Pte12g00033 495 PRINTS 6-phosphogluconate dehydrogenase signature 126 151 IPR006183 GO:0004616
Pte12g00033 495 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 9 180 IPR006115 GO:0050661
Pte12g00033 495 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 183 482 IPR008927 -
Pte12g00033 495 PIRSF 6PGD 2 489 IPR006113 GO:0004616|GO:0006098
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00033 Pte-Chr12 388131 391169 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00033 K00033 - csav:115716152 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00033 12 388131 391169 Pte12g00033 12 388131 391169 RCT