Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00396 ATGGATGCTTCCACTCTCTCCCGCATAGGCTTAGCTGGCCTCGCCGTCATGGGCCAAAACCTAGCCCTAAACATCGCCGAGAAAGGTTTCCCTATCTCCGTCTACAATCGCACTACTTCCAAAGTCGATGAAACTGTAGATCGGGCCCAACGTGAAGGCTCTCTTCCGTTAACCGGTCAATACAACCCTCGCGATTTCGTTCTATCTCTTCAACGTCCTAGATCAGTCATCATCCTTGTCAAAGCCGGCGCCCCCGTCGATCAAACTATTGCTGCACTTTCCGACCATATGGAACCCGGTGACACCATCATCGACGGTGGTAACGAGTGGTATGAAAATACCGAACGAAGAATTCAACAGATTTCAGAGAAAGGCATTCTTTATCTCGGCATGGGAGTTTCCGGTGGTGAAGAAGGTGCGAGAAATGGACCTTCTCTTATGCCTGGTGGGAGTTTCGAGGCTTATAGTAATATTCAAGATATTCTCACAAAGGTTGCTGCTCAAGTTGAAGATGGTCCTTGTGTTACTTACATTGGTGAAGGAGGTTCTGGAAATTTTGTTAAGATGGTTCATAATGGTATTGAATATGGTGATATGCAACTTATTTCTGAAGCTTATgatgttttgaaacatgttggtGGTTTATCGAATTCTGAACTTGCTGATATTTTTGCTGAGTGGAATAGTGGTGAATTAGAGAGTTTTCTTATTGAAATTACTGCTGATATTTTTAAGGTGAAGGATGAAGGTGGTGATGGGTATTTAGTGGATAAGATTTTGGATAAGACTGGTATGAAGGGTACTGGTAAATGGACAGTTCAACAAGCGGCGGAGTTATCGGTGGCTGCACCGACGATTGCTGCTTCGTTGGATTGTAGGTATTTGAGTGGGTTGAAGGAGGAGAGGGAGAATGCGGCTGCGGTTTTGAAGGAAGCGGGGTTGAGTGAGGATGTAGGAGGGTTTGTGAGAAGTGGGATTGATAAGAAACGGTTAATTGATGATGTGAGACAAGCTTTGTATGCTTCCAAGATTTGTAGTTATGCACAAGGGATGAATTTGTTGAGGGCAAAGAGTGATGAGAAAGGTTGGAATTTGAATTTCGGGGAATTGGCTAGGATTTGGAAAGGTGGGTGTATTATAAGAGCAGTGTTTTTGGATAGGATTAAGAAGGCTTATCAGAGGAACCCTAATTTGGCTAGTTTGATAGTGGATCCTGAATTTGCTAAGGAAATGGTGCAGAGGCAAGGAGCATGGAGAAGAGTTGTGGGGTTGGCTATATCAGCTGGGATTAGTACTCCTGGAATGTGTGCTAGTCTTGCTTACTTTGATACATATAGGAGAGCAAGGCTTCCTGCTAACCTTGTTCAAGCTCAGAGGGACTTGTTTGGAGCTCATACCTATGAGCGACTCGATCGCCCCGGCGCATTTCATACGGAGTGGACGAAACTTGCTCGTCAGAGTGGTGCCGGTGTTCTTAATTGA 1482 0.4426 MDASTLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVDRAQREGSLPLTGQYNPRDFVLSLQRPRSVIILVKAGAPVDQTIAALSDHMEPGDTIIDGGNEWYENTERRIQQISEKGILYLGMGVSGGEEGARNGPSLMPGGSFEAYSNIQDILTKVAAQVEDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNSELADIFAEWNSGELESFLIEITADIFKVKDEGGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERENAAAVLKEAGLSEDVGGFVRSGIDKKRLIDDVRQALYASKICSYAQGMNLLRAKSDEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLIVDPEFAKEMVQRQGAWRRVVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERLDRPGAFHTEWTKLARQSGAGVLN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00396 493 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE 1 490 IPR006183 GO:0004616
Tsu02g00396 493 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 8 179 IPR006115 GO:0050661
Tsu02g00396 493 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING 3, CHLOROPLASTIC 1 490 - -
Tsu02g00396 493 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 182 482 IPR008927 -
Tsu02g00396 493 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 181 IPR036291 -
Tsu02g00396 493 Gene3D - 5 185 - -
Tsu02g00396 493 Pfam 6-phosphogluconate dehydrogenase, C-terminal domain 184 480 IPR006114 GO:0004616|GO:0006098
Tsu02g00396 493 TIGRFAM gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 9 481 IPR006113 GO:0004616|GO:0006098
Tsu02g00396 493 Gene3D - 186 448 IPR013328 GO:0016491
Tsu02g00396 493 SMART 6PGD_2 184 481 IPR006114 GO:0004616|GO:0006098
Tsu02g00396 493 PRINTS 6-phosphogluconate dehydrogenase signature 7 30 IPR006183 GO:0004616
Tsu02g00396 493 PRINTS 6-phosphogluconate dehydrogenase signature 72 101 IPR006183 GO:0004616
Tsu02g00396 493 PRINTS 6-phosphogluconate dehydrogenase signature 125 150 IPR006183 GO:0004616
Tsu02g00396 493 PRINTS 6-phosphogluconate dehydrogenase signature 173 201 IPR006183 GO:0004616
Tsu02g00396 493 PRINTS 6-phosphogluconate dehydrogenase signature 255 282 IPR006183 GO:0004616
Tsu02g00396 493 PRINTS 6-phosphogluconate dehydrogenase signature 370 392 IPR006183 GO:0004616
Tsu02g00396 493 PIRSF 6PGD 1 488 IPR006113 GO:0004616|GO:0006098
Tsu02g00396 493 Gene3D - 449 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00396 Tsu-Chr2 3268968 3271264 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00396 K00033 - gmx:100803740 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00396 02 3268968 3271264 Tsu02g00396 02 3268968 3271264 ECH