Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0801 . . Adu06g02716 Aed6g1029 Aev07g1677 Ahy16g3011 . Aip06g03229 . . Amo06g3100 Apr9g0080 . Bach3g01855 . Bva10g00249 Car04g03082 . . Dod08g1569 . . Gma17g01840 Gma14g01264 Gso14g1096 . . . . . . Lan3g1739 . Lasa6g00708 . . . . . . Mepo4g00763 . . Mtr1g0113 . Phco2g00888 . Psa6g0792 Pste8g00347 . . . Spst8g01752 Ssu5g0683 . . Trre1g00842 Tsu01g00801 . . Vimu1g02067 . Vivi4g04939 .
Pvu1g0802 . . . Aed6g1030 . . . . . Amo16g3615 . . Arst6g03471 . . . . . . . . . . Gma14g01263 Gso14g1095 Gso17g1607 . . . . . . . Lasa6g00707 . . . . . . . . . . . . . . Pste8g00356 . . . Spst8g01751 Ssu5g0682 . . . Tsu01g00800 . . . . Vivi4g04941 .
Pvu1g0803 Acco05g2432 . . Aed6g1031 . . . . Alju07g2397 Amo16g3618 . Apr9g0084 . . . . Car04g03083 . Dere05g1977 Dod08g1600 Enph7g1085 Glsi10g0874 Gma17g01841 . . . . . . . . . . . . . . . . . Mepo4g00762 Mesa1g00806 Mibi08g2111 Mtr1g0114 . . . . . . . . . . Sto5g0684 . . . . . . . . .
Pvu1g0804 . . Adu06g02717 Aed6g1032 Aev07g1676 Ahy16g3012 . Aip06g03230 . . Amo06g3099 Apr9g0085 . Bach3g01858 . Bva10g00252 Car04g03087 . . . . . Gma17g01842 Gma14g01262 Gso14g1094 . . . . . . Lan3g1738 . . . . . . . . Mepo4g00760 Mesa1g00804 . Mtr1g0116 . Phco2g00891 . . Pste8g00361 . . . Spst8g01747 Ssu5g0681 . . Trre1g00839 Tsu01g00799 . . Vimu1g02072 . Vivi4g04944 .
Pvu1g0805 . . . Aed6g1033 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0806 . . Adu06g02601 . . . Ahy6g2360 . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g00803 . . . . Lja1g5269 . . . . . . Phco2g00893 . . . . . . . . . . . . . . Vimu1g02074 . . .
Pvu1g0807 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g5233 . . . . . . Phco2g00894 . . Pste8g02116 . . . Spst8g01793 . . . . . . . Vimu6g03709 . . .
Pvu1g0808 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal10g0238 . . Lan3g1696 . . . . . . . . . . . . . Phco2g00895 . . Pste8g02119 . . . . . . . . . . . . . . .
Pvu1g0809 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa5g04251 . . . . . . . . . . . . . . . . . . Spst8g01795 . . . . . . . Vimu1g02152 . . .
Pvu1g0810 Acco05g2415 Accr3g00596 . . . . . . Alju07g2376 Amo16g3627 . . Arst6g03487 . Bisa05g1288 . . . Dere05g1998 . Enph7g1070 Glsi10g0858 . . . . . . . . . . . Lasa5g04248 Lele25g0505 Lele26g0523 Lele27g1573 Lele28g0516 . . . . Mibi08g2095 . . Phco2g00896 Prci2g0804 . . . . . Spst8g01796 . Sto5g0698 . . . . . Vimu1g02153 . . .
   
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Select Species Gene Chromosome Start End Strand
Pste Pste8g00356 Chr8 1899829 1903180 +
Acco Acco05g2415 Chr05 39877776 39880960 +
Accr Accr3g00596 Chr3 6749815 6754199 -
Alju Alju07g2376 Chr07 49530783 49533820 +
Arst Arst6g03487 Chr6 102681054 102690860 -
Bisa Bisa05g1288 Chr05 22548073 22552204 -
Dere Dere05g1998 Chr05 29903218 29906387 -
Enph Enph7g1070 Chr7 16342612 16346733 +
Glsi Glsi10g0858 Chr10 5501891 5505229 +
Lele Lele25g0505 Chr25 3183436 3186597 -
Lele Lele26g0523 Chr26 3314558 3317755 -
Lele Lele27g1573 Chr27 21521597 21526053 +
Lele Lele28g0516 Chr28 3277025 3280165 -
Mibi Mibi08g2095 Chr08 38384790 38388287 +
Prci Prci2g0804 Chr2 6131135 6135578 -
Sto Sto5g0698 Chr5 4732542 4735343 -
Spst Spst8g01793 Chr8 21619332 21622797 +
Pvu Pvu1g0801 Chr1 11514033 11526637 +
Adu Adu06g02716 Chr06 103764702 103774602 +
Aed Aed6g1029 Chr6 14549881 14565143 +
Aev Aev07g1677 Chr07 17541919 17565627 -
Ahy Ahy16g3011 Chr16 145211694 145221613 +
Aip Aip06g03229 Chr06 128400262 128410587 +
Amo Amo06g3100 Chr06 97941452 97951470 -
Apr Apr9g0080 Chr9 1023910 1037699 +
Bach Bach3g01855 Chr3 26755407 26767611 +
Bva Bva10g00249 Chr10 3564573 3574513 +
Car Car04g03082 Chr04 58942470 58951590 +
Dod Dod08g1569 Chr08 35940141 35962103 +
Gma Gma17g01840 Chr17 30194688 30208963 +
Gma Gma14g01264 Chr14 22154313 22170744 -
Gso Gso14g1096 Chr14 20703755 20717487 -
Lan Lan3g1739 Chr3 29970879 29980074 -
Lasa Lasa6g00708 Chr6 24503243 24510254 -
Mepo Mepo4g00763 Chr4 10095856 10105475 -
Mtr Mtr1g0113 Chr1 1239132 1249478 +
Phco Phco2g00888 Chr2 10721647 10733916 +
Psa Psa6g0792 Chr6 27560276 27567300 -
Pste Pste8g00347 Chr8 1857284 1872394 +
Spst Spst8g01752 Chr8 21040261 21065439 -
Ssu Ssu5g0683 Chr5 16265911 16279044 -
Trre Trre1g00842 Chr1 6361953 6369925 -
Tsu Tsu01g00801 Chr01 7211645 7220461 -
Vimu Vimu1g02067 Chr1 29078303 29089599 +
Vivi Vivi4g04939 Chr4 179553431 179560503 +
Pvu Pvu1g0802 Chr1 11562423 11563022 +
Aed Aed6g1030 Chr6 14566377 14571020 +
Amo Amo16g3615 Chr16 146683030 146686306 -
Arst Arst6g03471 Chr6 102480542 102483971 +
Gma Gma14g01263 Chr14 22018384 22023545 -
Gso Gso14g1095 Chr14 20553485 20558668 -
Gso Gso17g1607 Chr17 26196335 26201318 -
Lasa Lasa6g00707 Chr6 24493032 24495231 -
Pste Pste8g00356 Chr8 1899829 1903180 +
Spst Spst8g01751 Chr8 21032663 21037623 -
Ssu Ssu5g0682 Chr5 16248061 16252505 -
Tsu Tsu01g00800 Chr01 7206303 7209903 -
Vivi Vivi4g04941 Chr4 179562362 179564895 +
Pvu Pvu1g0803 Chr1 11569140 11571304 +
Acco Acco05g2432 Chr05 40036020 40038984 -
Aed Aed6g1031 Chr6 14571708 14575015 +
Alju Alju07g2397 Chr07 49684640 49687594 -
Amo Amo16g3618 Chr16 146724028 146727290 +
Apr Apr9g0084 Chr9 1048893 1052803 +
Car Car04g03083 Chr04 58954111 58957593 +
Dere Dere05g1977 Chr05 29716011 29718600 +
Dod Dod08g1600 Chr08 37221683 37223836 +
Enph Enph7g1085 Chr7 16478765 16480691 -
Glsi Glsi10g0874 Chr10 5603581 5606609 -
Gma Gma17g01841 Chr17 30292343 30308940 +
Mepo Mepo4g00762 Chr4 10090879 10094704 -
Mesa Mesa1g00806 Chr1 10527206 10530051 -
Mibi Mibi08g2111 Chr08 38546181 38548846 -
Mtr Mtr1g0114 Chr1 1250792 1254014 +
Sto Sto5g0684 Chr5 4632527 4634562 +
Pvu Pvu1g0804 Chr1 11582575 11587411 -
Adu Adu06g02717 Chr06 103778106 103780314 +
Aed Aed6g1032 Chr6 14588787 14592738 -
Aev Aev07g1676 Chr07 17534290 17537776 -
Ahy Ahy16g3012 Chr16 145225167 145227519 +
Aip Aip06g03230 Chr06 128411743 128413769 +
Amo Amo06g3099 Chr06 97938518 97940397 -
Apr Apr9g0085 Chr9 1067726 1071038 +
Bach Bach3g01858 Chr3 26782408 26784895 +
Bva Bva10g00252 Chr10 3586516 3589013 +
Car Car04g03087 Chr04 58985561 58988449 +
Gma Gma17g01842 Chr17 30388651 30392980 +
Gma Gma14g01262 Chr14 21586760 21591317 -
Gso Gso14g1094 Chr14 20136791 20141354 -
Lan Lan3g1738 Chr3 29965603 29968589 -
Mepo Mepo4g00760 Chr4 10082646 10086755 -
Mesa Mesa1g00804 Chr1 10519779 10523253 -
Mtr Mtr1g0116 Chr1 1263789 1267355 +
Phco Phco2g00891 Chr2 10779273 10783544 -
Pste Pste8g00361 Chr8 1911049 1914604 +
Spst Spst8g01747 Chr8 21017787 21021650 -
Ssu Ssu5g0681 Chr5 16236676 16241787 -
Trre Trre1g00839 Chr1 6350481 6352960 -
Tsu Tsu01g00799 Chr01 7201833 7205004 -
Vimu Vimu1g02072 Chr1 29153119 29154578 +
Vivi Vivi4g04944 Chr4 179581840 179585016 +
Pvu Pvu1g0805 Chr1 11591949 11595545 -
Aed Aed6g1033 Chr6 14593227 14599469 -
Pvu Pvu1g0806 Chr1 11626713 11633580 +
Adu Adu06g02601 Chr06 101624967 101629233 -
Ahy Ahy6g2360 Chr6 107467561 107471827 +
Lasa Lasa6g00803 Chr6 29950769 29953780 -
Lja Lja1g5269 Chr1 80012078 80019247 -
Phco Phco2g00893 Chr2 10805870 10814170 +
Vimu Vimu1g02074 Chr1 29196059 29212995 +
Pvu Pvu1g0807 Chr1 11652107 11658900 +
Lja Lja1g5233 Chr1 78310103 78317013 +
Phco Phco2g00894 Chr2 10820030 10822944 +
Pste Pste8g02116 Chr8 18423264 18433738 +
Spst Spst8g01793 Chr8 21619332 21622797 +
Vimu Vimu6g03709 Chr6 35135167 35160306 +
Pvu Pvu1g0808 Chr1 11665940 11675364 +
Lal Lal10g0238 Chr10 3377528 3379332 +
Lan Lan3g1696 Chr3 29413442 29421701 +
Phco Phco2g00895 Chr2 10835388 10853559 +
Pste Pste8g02119 Chr8 18478563 18484219 -
Pvu Pvu1g0809 Chr1 11683892 11685638 -
Lasa Lasa5g04251 Chr5 643646153 643655522 +
Spst Spst8g01795 Chr8 21670495 21683456 +
Vimu Vimu1g02152 Chr1 30797721 30799473 -
Pvu Pvu1g0810 Chr1 11693525 11699770 -
Acco Acco05g2415 Chr05 39877776 39880960 +
Accr Accr3g00596 Chr3 6749815 6754199 -
Alju Alju07g2376 Chr07 49530783 49533820 +
Amo Amo16g3627 Chr16 146908434 146916338 -
Arst Arst6g03487 Chr6 102681054 102690860 -
Bisa Bisa05g1288 Chr05 22548073 22552204 -
Dere Dere05g1998 Chr05 29903218 29906387 -
Enph Enph7g1070 Chr7 16342612 16346733 +
Glsi Glsi10g0858 Chr10 5501891 5505229 +
Lasa Lasa5g04248 Chr5 643459280 643462412 +
Lele Lele25g0505 Chr25 3183436 3186597 -
Lele Lele26g0523 Chr26 3314558 3317755 -
Lele Lele27g1573 Chr27 21521597 21526053 +
Lele Lele28g0516 Chr28 3277025 3280165 -
Mibi Mibi08g2095 Chr08 38384790 38388287 +
Phco Phco2g00896 Chr2 10856423 10874561 -
Prci Prci2g0804 Chr2 6131135 6135578 -
Spst Spst8g01796 Chr8 21717084 21720225 +
Sto Sto5g0698 Chr5 4732542 4735343 -
Vimu Vimu1g02153 Chr1 30802009 30807771 -