Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04939 ATGAGTATCCAGCAACAAAATGATGGCGTCTCAGCTTCCAGAAAACATCTCGTTTTTGCTTATTATGTTACTGGTCATGGTTTTGGACATGCAACTCGAGTCACCGAGGTGGTGAGGCATTTGATCAATGCAGGACATGATGTGCATGTGGTTACTGGTGCTCCTGATTTTGTTTTTACCTCTGAAGTTGACTCTCCTAGATTATTCATTCGCAAGGTTCTTTTGGACTGTGGAGCTGTCCAGGCAGATGCTTTGACCGTCGATCGTCTGGCTTCTTTGGAGAAGTATTCTGAAACAGCGGTAAATCCTCGAGCTAAAATCCTGGCATTAGAAACTGAGTGGCTGAACTCTATCAAAGCTGACTTAGTGGTCTCCGATGTTGTTCCGGTTGCATGTCGTGCCGCAGCAGATGCTGGTATTCGATCTGTCTGTGTGACCAATTTCAGTTGGGACTTTATCTACGCAGAGTATGTCATGGCTGCTGGACTTCATCATCGTTCAATAGTTTGGCAGATAGCTGAGGATTATTCCCATTGCGAGTTCCTTATTCGCCTCCCGGGATATTGTCCAATGCCCGCTTTTCGCGATGTTATTGATGTCCCTTTGGTGGTGAGGAGACTGCACAAATCTGCAAAAGAGGTGAGGAAGGAGCTTGGTGTGCCCGATGATGTGAAGCTAGTTATTCTCAACTTCGGTGGCCAGCCGTCGGGATGGAAGTTAAAGGAGGAGTTTTTACCTTCTGGCTGGTTGTGCTTGGTTTGTGGTGCTTCTGAGAATGCAGAGCTACCACCGAATTTTAGGAGACTTGCTAAAGATGCATATACGCCCGACATTATTGCAGCAAGTGACTGTATGCTTGGAAAAATTGGATATGGCACCGTTAGTGAAGCCTTGGCGTACAAGTGTCCCTTTGTCTTTGTAAGAAGAGATTATTTCAACGAAGAACCGTTTTTGAGAAATATGCTTGAGTATTCTCAATGTGGTGTCGAAATGATCAGGCGGGATTTAATTACCGGTCACTGGAGACCTTATCTTGAACGTGCAATAAGTTTGAAACCCTGCTATGAAGCAGGAATTAATGGTGGCGAGGTAGCAGCTCACATCCTTCAGGAGACAGCTTTTGGAAAAAATTATGCATCAGATAAGCTTAGCGGCGCCAGAAGATTGCGTGATGCCATAGTTCTTGGTTATCAACTCCAAAGAGCTCCAGGCCGAGATATTGCGATACCTGAATGGTATGCTACAGCCGAAGACCAACTTAGCCAGTCATTACCTAGTTCTCCTCGGGATGACAGAGGCTTTACATCCCATTCAGGCGTTGAAGACTTTGACATTCTTCATGGAGATGTCCAAGATCTTCCAGATACCGTGGCGTTCTTACAGAGCCTATCCAAGTTGGTTGCAAAACACACTAGGAGAGAGCGCAAGGCTGCGGCTAATCTCTTCAATTGGGAGGAAGAAATTTTTGTAACGAGAGCTCCGGGAAGGTTAGATGTAATGGGCGGTATTGCTGATTATTCTGGTAGTCTTGTCCTGCAGATGCCAATTAGAGAGGCCTGTCATGTTGCTTTGCAAAGAGTCAATCCAAGTAAGCATAGACTTTGGAAACATGCAGAGGCCAGACAGAATGACAAAGGCGGGAATCCAACCGCTGTCTTGCAAATTGTATCATACGGCTCGGAATTAGGAAATCGTGGTCCAACGTTTGACATGGATATGTCTGATTTCATGGATGGAGACAAGCCAATCTCATATGAGAAAGCGAGAAAATACTTTGCTCAAGATCCATCGCAAAAGTGGGCAGCATATGTTGCTGGGGCAGTTTTGGTCTTAATGACCGAATTAGGCGTGAAATTTGAAGATAGTATAAGCATGCTGGTTTCATCCGCGGTCCCAGAAGGGAAAGGTGTATCATCTTCTGCATCCATCGAGGTCGCTAGTATGGCTGCTATAGCAGCAGCTCACGGATTAAATATCAGTTCAAGGGATCTTGCTTTGCTCTGTCAGAAGGTCGAAAATCACATTGTCGGAGCTCCATGCGGTGTCATGGACCAGATGGCTTCAGCATGCGGGGAAGCCAACAAACTTCTTGCTATGATTTGCCAGCCTGCAGAAATTGTCGGCCTCGTGGAAATTCCAAGTCATATCCGTGTTTGGGGAATTGATTCTGGAATAAGACACAGTGTTGGAGGTGCAGATTATGGATCTGTCAGAATCGGGGCATTTATGGGTATGAAGATGATAAAGTCGCAGGCTTCTCAGGTATTGACCGAAATGTGTGCCGCAAATGGGTTGAATTCCGATGAAGTTGAACAAGACGACATAGAGCTACTTAAACAAGAAACCTCCTTAGATTACTTGTGCAATTTAATGCCTCACAGATTTGAGGCTCTTTACGGCAAGACTATACCCGAATCTGTTGCTGGCGAGACATTTCTAAAGAAATATAAAAATCATAACGATCCTGTCACTGTTATTGATGAGAAGTGTAATTACGGAGTGAGAGCTCCCACAATACATCCTATCTATGAAAATTTCCGAGTCAAGACCTTCAAAGCGCTTCTGTCATCCGCAAGTTCAACCGATCAACTTACAACATTAGGAGAACTGCTATATCAGTGCCACTACAGCTATAGTGCTTGTGGACTTGGCTCTGATGGAACAGATAGGCTTGTACACTTGGTACAAGAATTGCAGCATAGTGCAGCGTCTAAATCCGAAGGCGGGACATTATGCGGCGCCAAGATCACTGGCGGGGGTTCGGGTGGAACAGTTTGTGTAATCGGTAGAAATTGTCTCAAGAGCAGCGAACAAATTTTTGAGATTCAGCAGAGATACAAAAAAGCTACTGGTTACTTGCCGTTTATTTTCGAGGGATCGTCACCAGGTGCGGGAAAGTTCGGCTACCTGAAGATTCTTCGGCGGGCTACCCTGAAAAAAGATGAGAGCTATGGTGATTTTAATGCAGTCTTGACTGAGAATGAAAGCTGA 2991 0.452 MSIQQQNDGVSASRKHLVFAYYVTGHGFGHATRVTEVVRHLINAGHDVHVVTGAPDFVFTSEVDSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVNPRAKILALETEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGLHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSAKEVRKELGVPDDVKLVILNFGGQPSGWKLKEEFLPSGWLCLVCGASENAELPPNFRRLAKDAYTPDIIAASDCMLGKIGYGTVSEALAYKCPFVFVRRDYFNEEPFLRNMLEYSQCGVEMIRRDLITGHWRPYLERAISLKPCYEAGINGGEVAAHILQETAFGKNYASDKLSGARRLRDAIVLGYQLQRAPGRDIAIPEWYATAEDQLSQSLPSSPRDDRGFTSHSGVEDFDILHGDVQDLPDTVAFLQSLSKLVAKHTRRERKAAANLFNWEEEIFVTRAPGRLDVMGGIADYSGSLVLQMPIREACHVALQRVNPSKHRLWKHAEARQNDKGGNPTAVLQIVSYGSELGNRGPTFDMDMSDFMDGDKPISYEKARKYFAQDPSQKWAAYVAGAVLVLMTELGVKFEDSISMLVSSAVPEGKGVSSSASIEVASMAAIAAAHGLNISSRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMICQPAEIVGLVEIPSHIRVWGIDSGIRHSVGGADYGSVRIGAFMGMKMIKSQASQVLTEMCAANGLNSDEVEQDDIELLKQETSLDYLCNLMPHRFEALYGKTIPESVAGETFLKKYKNHNDPVTVIDEKCNYGVRAPTIHPIYENFRVKTFKALLSSASSTDQLTTLGELLYQCHYSYSACGLGSDGTDRLVHLVQELQHSAASKSEGGTLCGAKITGGGSGGTVCVIGRNCLKSSEQIFEIQQRYKKATGYLPFIFEGSSPGAGKFGYLKILRRATLKKDESYGDFNAVLTENES 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04939 996 Pfam GHMP kinases N terminal domain 626 691 IPR006204 GO:0005524
Vivi4g04939 996 SUPERFAMILY Ribosomal protein S5 domain 2-like 481 705 IPR020568 -
Vivi4g04939 996 Gene3D - 465 718 IPR014721 -
Vivi4g04939 996 FunFam L-arabinokinase 820 952 - -
Vivi4g04939 996 PANTHER SLR1395 PROTEIN 1 704 - -
Vivi4g04939 996 FunFam GHMP kinase-like 208 350 - -
Vivi4g04939 996 Pfam GHMP kinases C terminal 863 944 IPR013750 -
Vivi4g04939 996 Gene3D - 820 951 IPR036554 -
Vivi4g04939 996 Gene3D Glycogen Phosphorylase B; 11 168 - -
Vivi4g04939 996 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 24 331 - -
Vivi4g04939 996 PRINTS Mevalonate kinase family signature 493 517 - -
Vivi4g04939 996 PRINTS Mevalonate kinase family signature 672 691 - -
Vivi4g04939 996 PRINTS Mevalonate kinase family signature 913 930 - -
Vivi4g04939 996 PRINTS Mevalonate kinase family signature 629 651 - -
Vivi4g04939 996 SUPERFAMILY GHMP Kinase, C-terminal domain 717 966 IPR036554 -
Vivi4g04939 996 PIRSF Gal_kin_glcsltr 1 978 IPR012369 -
Vivi4g04939 996 Gene3D Glycogen Phosphorylase B; 207 350 - -
Vivi4g04939 996 Pfam Glycosyl transferase family 1 21 147 - -
Vivi4g04939 996 FunFam L-arabinokinase 16 168 - -
Vivi4g04939 996 FunFam L-arabinokinase 479 718 - -
Vivi4g04939 996 Pfam Galactokinase galactose-binding signature 482 525 IPR019539 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04939 Vivi-Chr4 179553431 179560503 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04939 K12446 - gmx:100787860 1730.3