Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00842 ATGAGGATCGAACAAGAAAGTGATGGAGTTTCAGCTTCAAGAAAACATCTCGTTTTTGCTTATTACATTACTGGTCATGGTTTTGGTCATGCCACTCGAGTCACAGAGGTGGCGAGGCATTTGATCGATGCAGGACATGATGTGCATGTGGTAACTGGTGCACCTGATTTTGTTTTCACCTCTGAAATTGAGTCTCCTAGATTATTCATTCGCAAGGTGCTTTTGGACTGTGGAGCTGTTCAGGCAGATGCTTTGACCGTTGATCGCCTCGCTTCTTTGGAGAAGTATTCTGAAACAGCAGTGAAGCCCCGAGCTAAAATCTTAGCAATAGAAACCGAATGGCTGAACTCTATCAAAGCCGACTTAGTGGTCTCCGATGTTGTTCCAGTTGCATGTCGTGCGGCAGCAGATGCTGGCATTCGTTCTGTATGTGTGACCAATTTCAGTTGGGACTTCATCTATGCAGAGTATGTCATGGCTGCTGGACTTCATCATCGTTCAATAGTTTGGCAGATAGCTGAGGACTATTCCCATTGTGAGTTCCTTATTCGACTCCCGGGATATTGTCCAATGCCTGCTTTTCGTGATGTGATTGATGTCCCTTTGGTGGTGAGGAGGCTGCACAAATCTGCAAAAGAGGTGAGGAAGGAACTGAACGTACCCGATGATATGAAGCTAGTTATTCTCAACTTTGGCGGCCAGCCATCAGGATGGAAAATAAAGGAGGAATACTTACCTCCTGGCTGGTTGTGCCTGGTTTGTGGTGCTTCTGACAACGAGGACCTTCCACCAAATTTTAGGAAACTTGCTAGAGATGCATATACGCCCGACATTATTGCTGCATGTGACTGTATGCTTGGAAAAATCGGATATGGCACTTGTAGTGAAGCCTTGGCATACAAGTGCCCCTTCGTCTTTGTACGCAGAGATTATTTCAACGAAGAACCTTTTTTGAGAAATATGCTTGAGTATTATCAATGTGGTGTCGAAATGATCAGGAGGGATTTAATCACCGGTCACTGGAGACCTTATCTTGAACGTGCGATAAGTTTGAAACCCTGCTATGAAGCAGGCATTAATGGTGGTGAGGTGGCAGCTCACATCCTTCAGGAGACAGCTTTTGGAAAAAATTATGCATCAGATAAGCTTAGCGGGGCAAGAAGATTGCGCGATGCCATAGTTCTCGGTTATCAACTCCAAAGGGCCCCTGGCCGAGATGTTGCAATCCCAGAATGGTACTCTAAATCGGGAGACCAACTCGACCAATCAATACCTAGTGCACCTGGGCATGGAGGCTTTAGATTTCATTCGGGCACTGAAGACTTTGACATTCTTCACGGAGATGTTCAAGATCTTCCGGATACGGTGGCGTTCTTACAGAGCCTATCCGAGTTGGTTGCGAAGCACACAAAAAGGGAGCGCAAGGCTGCGGCTAATATCTTCAATTGGGAGGAAGAAATTTTCGTAACGAGAGCTCCTGGAAGGTTAGATGTAATGGGTGGCATTGCTGATTATTCCGGTAGTCTTGTACTACAGATGCCAATTAGAGAAGCTTGTCATGTTGCTTTGCAAAGAATCCATCCCAGTAAGCATAGACTGTGGAAACACGCCGAGGCCAGACAGAATGACAAAGGCGGAAGTCCAACTGCTGTCTTGCAAATTGTGTCATATGGCTCAGAATTAGGCAACCGTGGCCCAACATTTGACATGGATTTGTCTGATTTTATGGATGGAGACAAGCCAATCTCGTATAAGAAAGCAAGAGAATACTTTGCTAAAGATCCAGCCCAAAAGTGGGCTGCATATGTTGCCGGGGCAATTTTGGTCTTAATGACTGAATTGGGTGTGAAATTTGAAGATAGTATCAGCATACTGGTATCATCTGCGGTGCCAGAAGGGAAAGGTGTATCATCTTCTGCATCTGTTGAGGTTGCTAGCATGTCTGCTATTGCAGCAGCTCATGGGTTAAATATCGGTTCAAGGGATCTGGCTTTGCTCTGCCAGAAGGTGGAAAATCACATTGTAGGAGCTCCATGTGGTGTCATGGACCAGATGGCTTCGGCATGCGGTGAAGCCAACAAACTTCTTGCTATGATTTGCCAGCCTGCCGAGATTGTTGGCCTTGTCGAAATTCCGAACCATATCCGGGTTTGGGGAGTTGATTCTGGAATAAGACACAGTGTTGGCGGTGCAGATTATGGATCTGTCAGAATTGGTACCTTTATGGGAATGAAGATGATAAAGTCGAAGGCTTCTGAGGAATTGACTGAGATGTCTGCTGCAAAAGGATTGAATTCTGATGATGTTGAACAAGATGACATCGAATTACTTAAACAAGAAGCCTCCTTAGAATACTTATGTAATTTAACACCTCACAGATTTGAGGCTCTTTATGCTAAGATGATTCCCGAGTCCATTGTTGGTGAGAAATTTTTGGAGCAATATAAAAATCATAATGATCCTGTCACTATTATTGATGAGAAGCGTAATTACGGAGTGAAAGCTTCCACAATACATCCTATCTATGAAAATTTCCGAGTCAAGACCTTCAAAGCACTTCTGACATCAGCAAGTTCGTCCGATCAACTTACAGCTTTAGGAGAGTTGCTATATCAGTGTCACTACAGCTACAGTGCTTGTGGACTTGGTTCTGATGGAACAGATAGGCTTGTACACTTGGTGCAAGAATTGCAGCATAGTGCAGCGTCAAAATCGGAAGGCGGAACATTATATGGTGCCAAGATTACTGGTGGAGGTTCAGGTGGAACGGTTTGCGTAATCGGTAAAAATTGTCTCAAGAGCAGCGAACAAATTATTGAGGTTCAGAAGAGGTACAAAAAAGCTACCGGTTACTTGCCCTATCTTTTCGAGGGCTCATCACCAGGTGCAGGAAAGTTCGGTTACCTGAAAATTCGCCGGCGAGCTACCCCAAAAAAAGCCGACAGCTATGGGGATGTAAATGCAGCCTTGGCATAG 2976 0.4489 MRIEQESDGVSASRKHLVFAYYITGHGFGHATRVTEVARHLIDAGHDVHVVTGAPDFVFTSEIESPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVKPRAKILAIETEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGLHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSAKEVRKELNVPDDMKLVILNFGGQPSGWKIKEEYLPPGWLCLVCGASDNEDLPPNFRKLARDAYTPDIIAACDCMLGKIGYGTCSEALAYKCPFVFVRRDYFNEEPFLRNMLEYYQCGVEMIRRDLITGHWRPYLERAISLKPCYEAGINGGEVAAHILQETAFGKNYASDKLSGARRLRDAIVLGYQLQRAPGRDVAIPEWYSKSGDQLDQSIPSAPGHGGFRFHSGTEDFDILHGDVQDLPDTVAFLQSLSELVAKHTKRERKAAANIFNWEEEIFVTRAPGRLDVMGGIADYSGSLVLQMPIREACHVALQRIHPSKHRLWKHAEARQNDKGGSPTAVLQIVSYGSELGNRGPTFDMDLSDFMDGDKPISYKKAREYFAKDPAQKWAAYVAGAILVLMTELGVKFEDSISILVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIGSRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMICQPAEIVGLVEIPNHIRVWGVDSGIRHSVGGADYGSVRIGTFMGMKMIKSKASEELTEMSAAKGLNSDDVEQDDIELLKQEASLEYLCNLTPHRFEALYAKMIPESIVGEKFLEQYKNHNDPVTIIDEKRNYGVKASTIHPIYENFRVKTFKALLTSASSSDQLTALGELLYQCHYSYSACGLGSDGTDRLVHLVQELQHSAASKSEGGTLYGAKITGGGSGGTVCVIGKNCLKSSEQIIEVQKRYKKATGYLPYLFEGSSPGAGKFGYLKIRRRATPKKADSYGDVNAALA 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00842 991 SUPERFAMILY GHMP Kinase, C-terminal domain 716 965 IPR036554 -
Trre1g00842 991 PRINTS Mevalonate kinase family signature 912 929 - -
Trre1g00842 991 PRINTS Mevalonate kinase family signature 492 516 - -
Trre1g00842 991 PRINTS Mevalonate kinase family signature 628 650 - -
Trre1g00842 991 PRINTS Mevalonate kinase family signature 671 690 - -
Trre1g00842 991 Pfam GHMP kinases N terminal domain 624 690 IPR006204 GO:0005524
Trre1g00842 991 Gene3D - 464 717 IPR014721 -
Trre1g00842 991 Pfam Galactokinase galactose-binding signature 481 524 IPR019539 -
Trre1g00842 991 FunFam GHMP kinase-like 208 350 - -
Trre1g00842 991 Gene3D - 819 950 IPR036554 -
Trre1g00842 991 PANTHER SLR1395 PROTEIN 1 703 - -
Trre1g00842 991 FunFam L-arabinokinase 819 951 - -
Trre1g00842 991 PIRSF Gal_kin_glcsltr 1 977 IPR012369 -
Trre1g00842 991 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 24 331 - -
Trre1g00842 991 SUPERFAMILY Ribosomal protein S5 domain 2-like 479 704 IPR020568 -
Trre1g00842 991 Pfam GHMP kinases C terminal 862 938 IPR013750 -
Trre1g00842 991 Gene3D Glycogen Phosphorylase B; 11 168 - -
Trre1g00842 991 FunFam L-arabinokinase 478 717 - -
Trre1g00842 991 Gene3D Glycogen Phosphorylase B; 207 350 - -
Trre1g00842 991 FunFam L-arabinokinase 16 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00842 Trre-Chr1 6361953 6369925 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00842 K12446 - gmx:100306164 1716.05