Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5233 ATGAGCAGCAGTATCACCAAGGCTCTCATGGAACTCGAGTTAGACGATGATGGGAGAATCCCAAGAACAGGGAATGCTTTTACTGCTACGACGCACATAATAACGGTGGTGATTGGGGCTGGTGTGCTAGCTCTAGCGTGGGCATTGGCCCAACTAGGATGGATAGCTGGTATAGCCAGCGTGCTCTTATTTGCATCCATTTCTGTTTTCACTTACAGCCTTGTAGCCGATTGCTACAGATTTCCAGACCCAGTCAATGGCAAGAGAAATTACACTTACATGCAGGCTGTCAAGGCATACTTAGGTGGAACGATGCAAGTGATTTGTGGATCAATTGTATATGCGAAGCTCGCCGGGATCACAGTGGGCTACACAATAACTTCATCCATAAGCTTGGTAGCTATAAAGAAAGCAGTTTGCTTCCACCAAAGAGGACATGCAGCTGAGTGCAAATTTTCTTATAATCCCTTCATGATCGGCTTTGGGATATTGCAAATTTTCTTGTCTCAGATCCCAAACTTCCACGAACTCACATGGCTCTCAACAGTTGCTGCTATCACCTCATTTGGTTATGTATTCATTGCAATTGGGCTATGTCTCTCGGTTCTCATCTCAGGAGAAGGAGCTTCAACCAGCATAACTGGAACCAAAATAGGGCCGGAACTGTCTGCAGAAGACAAAATTTGGAGGGTTTTCAGTTCAATGGGAAATATAGCACTCGCTTGCAATTACGCTACTGTTATTTATGATATAATGGACACTCTAAAGTCACATCCACCAGAAAATAAACAAATGAAAAAGGCTAACGTGATAGGGATCACAGCAATGACAACAGTATTTCTACTATGTAGTGGCCTTGGCTATGCTTCATTTGGTGATCATACACCTGGTAACATTTTTACTGGATTTCGTGAGCCCTTTTGGTTGGTCGCCTTGGGAAATGGTTTCATCGTAATCCACATGATTGGAGCATATCAGGTGATGGCTCAACCATTCTTTCGTGTAGTTGAAATGGGCGCTAACATAGTTTGGCCAGATTCAAATTTCATAAACAAGGAATATCCAATCAGGATGGGCAGTGTAACAGTTTATTTCAACCTGTTCAGGCTAATATGGAGGACGATATTCGTGATTTTGGCTACAATTCTTGCCATGGCAATGCCATTTTTCAATGAGGTTCTTTCCCTGCTTGGAGCAATTGGGTTCGGGCCTCTTGTTGTGTTCTTCCCTATACAAATGCACATTGCCCAGAAACGCATAAGAAAACTATCAGTGAAGTGGTGTGCACTCCAACTTTTAAACTGCCTCTGCTTACTTGTTTCATTGGCTGCTGTAGTTGGTTCAATCCATCAAATAAGCCAGGATCTTCACAAATACAAGATATTCTCGTATAAACAATAG 1401 0.4276 MSSSITKALMELELDDDGRIPRTGNAFTATTHIITVVIGAGVLALAWALAQLGWIAGIASVLLFASISVFTYSLVADCYRFPDPVNGKRNYTYMQAVKAYLGGTMQVICGSIVYAKLAGITVGYTITSSISLVAIKKAVCFHQRGHAAECKFSYNPFMIGFGILQIFLSQIPNFHELTWLSTVAAITSFGYVFIAIGLCLSVLISGEGASTSITGTKIGPELSAEDKIWRVFSSMGNIALACNYATVIYDIMDTLKSHPPENKQMKKANVIGITAMTTVFLLCSGLGYASFGDHTPGNIFTGFREPFWLVALGNGFIVIHMIGAYQVMAQPFFRVVEMGANIVWPDSNFINKEYPIRMGSVTVYFNLFRLIWRTIFVILATILAMAMPFFNEVLSLLGAIGFGPLVVFFPIQMHIAQKRIRKLSVKWCALQLLNCLCLLVSLAAVVGSIHQISQDLHKYKIFSYKQ* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5233 466 PANTHER OS05G0424000 PROTEIN-RELATED 11 460 - -
Lja1g5233 466 Pfam Transmembrane amino acid transporter protein 23 452 IPR013057 -
Lja1g5233 466 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 11 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5233 Lja-Chr1 78310103 78317013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5233 13 462 Organic Solute Cotransporters AT1G10010 51.429 8.50e-175 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5233 K24917 - gmx:100810628 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3675 1 45865038 45871218 Lja1g5233 1 78310103 78317013 PCT