Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0808 ATGCTTCTCCGTTTCTCCCACTTTCTCTGCCACCGTCCACCTCTGCACGCCATGGCGCGTGTCGTCACGTGCGCAACTCAGCCTCCTCATCTCTCTCCCGCAACCAACAGCGCCATCTCTAGCCGCGTCTCTCTGTTCTTGAAATCCCCGGGTTTTGGCCGCAGTTTTCATGCGCTCACCCGGTGCCGCAGCGAAGGGAGGCACCGCCTCGTGGCAGTAGTTCGCTCCGAAGGGAAGGAGTATCGGAAGGTGAGGCGAAGAGCATCCAAGAACAAAGAGAAAGAGTTGCAACTCAGCGTGCAAATTTGCCTCGAAGAAGATTTGCCTGACGATCCCGAAATCTTGAGCATTGCGGAGTTGCTTCGGCTAAATGTTCCAATGGCGATGAAACTGGCTTTTGATGGTTTGAAAGGTTCCGGTTATAAAACACGAGACACTGCTATAAGTGATGTTGGTGGGTTTGATAGTGTTGAGGTATCGATACTTCTTTGCAATGATGAGTTTATTCGAAAACTTAATAAGGAATGGAGAGATGAAGACCATGCCACAGATGTTCTCTCAATGTCAAGTCATATACCTGAGCTCAAGATTCCTATTCTCATGTTGGGTGATATTGTAATTTCTGTTGAGACAGCTGCAAGACAAGCAGAGGAAAGAGGGCACACTCTTCTTGATGAGATCCGAATCCTCATGGTTCATGGCTTGTTACATCTTTTGGGATTTGATCATGAAATAAGTGAAGAGGCTGAAGTAGAAATGGAGAGAGAGGAGGAAATCCTTTTAAAGAGTCTTGATTGGAAAGGAAAAGGGCTAATAAAAAGTGCATGTGATGCTGAAACAAATTCAAATTTAAGTTTTCATCAAAACAATTCAGATGACAGGAAGAAAGAAGGAAGTCTTAGATTTTACAAACCAAAGTTCAGATATATCTTCTGTGATATGGATGGAACATTGCTGAACAGCAAAAGTCAAATTTCTTCGACAACTGTCAATGCTTTGAGAGAGGCATCTTCAAGAGGGGTGAAAGTTGTGATAGCTACCGGAAAAGCTCGTCCAGCTGTGTTAGACATTTTTAAAATGGTTGATTTAGCTGGAAAGGATGGCATTGTTTCAGAATTTTCTCCTGGGGTTTTCTTACAGGGATTGCTTGTTTATGGCAGACAAGGTCAGGAAATATTTAGGAGCAACTTAGATCTAAATGTCTGTAGAGAGGCATGTCTTTACTCTTTGGAGAATAAGGTACCGCTAATTGCATTTTGTGAAGGGCGTTGCTTAACCCTATTTCATGATCCGCTTGTTGATTCATTGCATACAATATACCATGAACCGAAGGCTGAGGTCATGCCATCTGTTGAACATCTATTGGCTTCTTCCGAGATACAGAAAATGATTTTCTTAGACACAGCCGAGAAGGTGGCTGATACCTTGCGGCCATACTGGTCAGATGCAACAAAAGGTCGTGCCACTGTTGTTCAAGCTGTGCCTGACATGCTAGAAATTGTACCCTTGGGAACATCAAAAGGGAATGGAGTAAAAGTGCTGCTAGATCATTTGGGGGTTACTGCTAAGGAGATAATGGCTATTGGTGATGGGGAAAATGATATGGAGATGCTTGATCTGGCTTCTCTAGGCATCGCACTTAGTAATGGATCAGAAAAGACCAAAGCTGTGGCTAACGTAATTGGTTTAAGCAATGATGAAGACGGTGTGGCAGATGCCATCTATAGATATGCATTCTGA 1740 0.4379 MLLRFSHFLCHRPPLHAMARVVTCATQPPHLSPATNSAISSRVSLFLKSPGFGRSFHALTRCRSEGRHRLVAVVRSEGKEYRKVRRRASKNKEKELQLSVQICLEEDLPDDPEILSIAELLRLNVPMAMKLAFDGLKGSGYKTRDTAISDVGGFDSVEVSILLCNDEFIRKLNKEWRDEDHATDVLSMSSHIPELKIPILMLGDIVISVETAARQAEERGHTLLDEIRILMVHGLLHLLGFDHEISEEAEVEMEREEEILLKSLDWKGKGLIKSACDAETNSNLSFHQNNSDDRKKEGSLRFYKPKFRYIFCDMDGTLLNSKSQISSTTVNALREASSRGVKVVIATGKARPAVLDIFKMVDLAGKDGIVSEFSPGVFLQGLLVYGRQGQEIFRSNLDLNVCREACLYSLENKVPLIAFCEGRCLTLFHDPLVDSLHTIYHEPKAEVMPSVEHLLASSEIQKMIFLDTAEKVADTLRPYWSDATKGRATVVQAVPDMLEIVPLGTSKGNGVKVLLDHLGVTAKEIMAIGDGENDMEMLDLASLGIALSNGSEKTKAVANVIGLSNDEDGVADAIYRYAF* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0808 579 Gene3D - 310 574 IPR023214 -
Pvu1g0808 579 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 309 546 IPR006379 -
Pvu1g0808 579 Pfam haloacid dehalogenase-like hydrolase 310 574 - -
Pvu1g0808 579 SFLD C2.B: Phosphomannomutase and Phosphatase Like 310 578 - -
Pvu1g0808 579 Hamap Endoribonuclease YbeY [ybeY]. 99 273 IPR002036 GO:0004222|GO:0006364
Pvu1g0808 579 Pfam Endoribonuclease YbeY 154 263 IPR002036 GO:0004222|GO:0006364
Pvu1g0808 579 TIGRFAM TIGR00043: rRNA maturation RNase YbeY 158 264 IPR002036 GO:0004222|GO:0006364
Pvu1g0808 579 ProSitePatterns Hypothetical cof family signature 1. 309 320 - -
Pvu1g0808 579 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 149 268 - -
Pvu1g0808 579 TIGRFAM Cof-subfamily: Cof-like hydrolase 309 574 IPR000150 GO:0016787
Pvu1g0808 579 SUPERFAMILY HAD-like 303 577 IPR036412 -
Pvu1g0808 579 Gene3D Metalloproteases ("zincins"), catalytic domain 136 266 IPR023091 GO:0004222
Pvu1g0808 579 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 18 579 - -
Pvu1g0808 579 CDD HAD_Pase 310 576 - -
Pvu1g0808 579 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 18 579 IPR002036 GO:0004222|GO:0006364
Pvu1g0808 579 ProSitePatterns Uncharacterized protein family UPF0054 signature. 233 243 IPR020549 -
Pvu1g0808 579 ProSitePatterns Hypothetical cof family signature 2. 528 550 - -
Pvu1g0808 579 Gene3D - 396 503 - -
Pvu1g0808 579 SFLD Haloacid Dehalogenase 310 578 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0808 - - gmx:100803046 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0808 1 11665940 11675364 Pvu1g0808 1 11665940 11675364 ECH
Pvu9g1139 9 16678533 16681194 Pvu1g0808 1 11665940 11675364 ECH