Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1548 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01684 . . . . . . . . . . . . . . . . . .
Pvu11g1549 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lan8g1398 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1550 . . . . . . . . . . . . . . . . Car07g02130 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01687 . . . . . . Spst11g00680 . . . . . . . Vimu5g00363 . . .
Pvu11g1551 . . . Aed5g1087 . . . . . . . . . . . . . Cca04g01327 . . . . Gma12g01300 Gma06g02367 . Gso6g2158 . . Lal9g0482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1552 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1553 . . . Aed5g1088 . . . . . . . . . Bach9g00681 . Bva07g01831 . Cca04g01331 . . . . . . Gso12g1180 . . . Lal9g0483 . . . . . . . . . . Mal5g2449 Mepo1g02909 . . Mtr8g1731 . Phco9g01689 . . Pste1g03906 . Rops3g01729 Seca4g05245 Spst11g00677 . . . . . . Vifa4g00218 Vimu5g00368 . . .
Pvu11g1554 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1555 . . . Aed5g1089 . . . . . . . . . Bach9g00682 . Bva07g01830 . . . . . . . . . . Lal1g0552 Lal2g0550 Lal9g0484 Lan7g0567 . . . . . . . . . . . . . . . Phco9g01691 . . Pste1g03908 . . . Spst11g00675 . . . . . . . . . . .
Pvu11g1556 . . . Aed5g1090 . . . . . . . . Arst3g02200 . . Bva07g01829 Car07g02132 . . . . . . . . . Lal1g0553 Lal2g0551 Lal9g0485 Lan7g0568 . . . . . . . . . . . . . . . Phco9g01692 . . Pste1g03911 . . . Spst11g00674 . . Tpr7g2006 . . . . . . . Vra2g1192
Pvu11g1557 . . . . . . . . . . . . . . . . . . . . . . . . . . Lal1g0565 . . . Lan8g1395 Lan13g0572 . Lasa4g01381 . . . . . . . . . . . Phco9g01693 . . . . . . . . . . . Tsu08g02070 . . . . Vivi7g00247 .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g1548 Chr11 39094479 39098247 -
Phco Phco9g01684 Chr9 39753608 39756778 -
Pvu Pvu11g1549 Chr11 39136641 39140022 -
Lan Lan8g1398 Chr8 20838067 20842623 +
Pvu Pvu11g1550 Chr11 39161241 39166383 +
Car Car07g02130 Chr07 27291214 27296435 -
Phco Phco9g01687 Chr9 39787561 39791885 +
Spst Spst11g00680 Chr11 29028781 29033064 -
Vimu Vimu5g00363 Chr5 3270693 3275022 -
Pvu Pvu11g1551 Chr11 39170643 39174001 -
Aed Aed5g1087 Chr5 9139669 9153760 -
Cca Cca04g01327 Chr04 16936795 16941271 -
Gma Gma12g01300 Chr12 18411881 18415974 -
Gma Gma06g02367 Chr06 45193943 45197222 +
Gso Gso6g2158 Chr6 41384537 41388607 +
Lal Lal9g0482 Chr9 3240469 3244325 -
Pvu Pvu11g1552 Chr11 39188879 39189955 +
Pvu Pvu11g1553 Chr11 39232906 39233771 +
Aed Aed5g1088 Chr5 9169995 9171193 +
Bach Bach9g00681 Chr9 4737798 4738327 +
Bva Bva07g01831 Chr07 16586261 16586982 -
Cca Cca04g01331 Chr04 17049719 17050688 -
Gso Gso12g1180 Chr12 18593195 18593848 -
Lal Lal9g0483 Chr9 3245413 3245718 +
Mal Mal5g2449 Chr5 67549100 67549441 +
Mepo Mepo1g02909 Chr1 31653954 31654621 -
Mtr Mtr8g1731 Chr8 25757240 25757587 +
Phco Phco9g01689 Chr9 39843719 39844054 +
Pste Pste1g03906 Chr1 19976425 19980534 +
Rops Rops3g01729 Chr3 29212220 29212751 -
Seca Seca4g05245 Chr4 98014280 98014636 -
Spst Spst11g00677 Chr11 28989726 28990061 -
Vifa Vifa4g00218 Chr4 42899635 42899976 -
Vimu Vimu5g00368 Chr5 3315773 3316446 -
Pvu Pvu11g1554 Chr11 39371251 39371364 -
Pvu Pvu11g1555 Chr11 39372209 39372854 -
Aed Aed5g1089 Chr5 9217372 9218412 +
Bach Bach9g00682 Chr9 4741618 4742646 +
Bva Bva07g01830 Chr07 16581939 16583373 -
Lal Lal1g0552 Chr1 3571170 3571640 +
Lal Lal2g0550 Chr2 3320262 3320873 +
Lal Lal9g0484 Chr9 3258023 3258749 +
Lan Lan7g0567 Chr7 4345751 4347043 +
Phco Phco9g01691 Chr9 39924369 39925782 -
Pste Pste1g03908 Chr1 20030655 20032703 +
Spst Spst11g00675 Chr11 28946638 28947752 -
Pvu Pvu11g1556 Chr11 39388297 39393635 -
Aed Aed5g1090 Chr5 9224676 9228381 -
Arst Arst3g02200 Chr3 27640862 27643945 -
Bva Bva07g01829 Chr07 16577485 16580385 +
Car Car07g02132 Chr07 27421688 27424874 +
Lal Lal1g0553 Chr1 3572282 3574941 -
Lal Lal2g0551 Chr2 3322490 3324873 -
Lal Lal9g0485 Chr9 3262322 3265537 -
Lan Lan7g0568 Chr7 4348774 4350983 -
Phco Phco9g01692 Chr9 39945539 39950499 -
Pste Pste1g03911 Chr1 20059709 20063061 -
Spst Spst11g00674 Chr11 28935628 28940259 +
Tpr Tpr7g2006 Chr7 24688463 24692992 -
Vra Vra2g1192 Chr2 16073306 16074629 +
Pvu Pvu11g1557 Chr11 39416128 39426213 -
Lal Lal1g0565 Chr1 3637544 3643435 -
Lan Lan8g1395 Chr8 20813186 20819485 +
Lan Lan13g0572 Chr13 4474087 4480180 -
Lasa Lasa4g01381 Chr4 136616597 136623776 +
Phco Phco9g01693 Chr9 39967414 39977376 -
Tsu Tsu08g02070 Chr08 27426036 27431893 -
Vivi Vivi7g00247 Chr7 14782737 14790878 -
Vimu Vimu5g00363 Chr5 3270693 3275022 -