Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1553 ATGGAACTTGATCACGGTTTTGACTTTGAGGACCGTTTCCCTTCCATGATTGCAAGACTAGGTGCAGAAGGGTTCATTGGGGAGCTCTGCCACGGGTTTCATTTGCTCATGGACGTGAACATGGGGCTCATCACGTTTGAGAGCTTGAAGGTGAGCACCTACTTGCTCGGTTTGGAGGTGAGGGATGATGAGTTGTTGTGCATGCTCATGGAGGGGGATTTGGATGGAGATGGAGCTCTTAACCAAATGGAGTTTTGCATTCTCATGTTTAGGTTGAGTCCTTGCTTGATGGATATGCAAGGTAATGAGGATCCAGTGCATGCTAGTGTAATATAA 336 0.4702 MELDHGFDFEDRFPSMIARLGAEGFIGELCHGFHLLMDVNMGLITFESLKVSTYLLGLEVRDDELLCMLMEGDLDGDGALNQMEFCILMFRLSPCLMDMQGNEDPVHASVI* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1553 111 Gene3D - 7 108 - -
Pvu11g1553 111 SUPERFAMILY EF-hand 24 96 IPR011992 -
Pvu11g1553 111 ProSitePatterns EF-hand calcium-binding domain. 73 85 IPR018247 -
Pvu11g1553 111 PANTHER CALCIUM-BINDING PROTEIN KIC 4 100 IPR044205 GO:0005509
Pvu11g1553 111 PANTHER CALCIUM-BINDING PROTEIN PBP1-LIKE 4 100 - -
Pvu11g1553 111 Pfam EF-hand domain pair 42 91 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1553 Pvu-Chr11 39232906 39233771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1553 9 98 EF-hand Containing Proteins AT5G54490 58.696 4.33e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1553 K24345 - gmx:100795879 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1553 11 39232906 39233771 Pvu11g1553 11 39232906 39233771 ECH
Pvu5g0916 5 24354170 24354813 Pvu11g1553 11 39232906 39233771 PCT